Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00832 ATGGGTGAGGAGAGATCCGGTTCACTGTACAAGAGAGTGAAGATCCATGGACAAGTTCTATTGGGATTTATGTTGATCTGCATAGTCCAGTTTTCACTTGCAGCCACTGATCCATCTGATGTTGCTGCAATTAATGGCTTATATACTGCATTGGGCAACCCTATTCTTCCTGGGTGGGTTTCTAGTGCGGGAGACCCCTGTGGACAAGGGTGGCAAGGTGTTCAATGTAATGGTTCAGTCATACAAGAAATAGTTCTGAATGGTGCAAACTTGGGAGGAGAACTAGGTGATAGCTTGGGAGGTTTTGTTTCTATCAGAGCAATAGTTCTAAACAACAATCACATTGGGGGAAGTATTCCATCCAGTTTGCCAGTCACTTTACAACACCTCTTTCTTTCAGATAACCAGTTCACTGGAAGTATTCCAGCCTCTTTATCCACATTGACTGAACTGACTGACATGTCACTTAACAACAATCTTTTAACAGGAGAAATACCAGATGCATTTGAGTCTCTCACGCAATTGATCAATCTAGATTTATCTAATAACAATTTGAGTGGGGAATTGCCTCCATCTATGGAGAATTTGTCAGCTCTGACCAGCGTACATTTACAGAACAATAATTTGTCTGGGATCCTCAATGTCTTACAAGACCTTCCACTGCAAGATTTGAACGTTGAGAACAACCAGTTTGCCGGACCAATACCTCCGAAGTTGTTAATGATCCCAAACTTCAGAAATGATGGAAACCCATTTAATCTTAATGGTAATGCTACTATAGCTCCAACACATGCACCTCATTCTCCAGTTATAGCACCACCACCTGGACGTATACCTACTAAACCAACTAAGGGACCAACTTCAGCAAAGGAATCAAATTCTGGGAAATCGAATAAAAACACCAAAAGGGTGGTTTGGATATCTATTTCTAGTATATTGGTGTTTATTATTGTAGTATTGGGTCTTCTTCTCTTTGTTCCAAGATGTAGCAGAAGAGAACGGGTTGACAGAAGCTCCAAGCAACATCAAGTTGGTGTATATGGAGGTGAAACACAGAATCGTAGGGAATATGGGGATTTAGTCCAACCACCTAATCAAACTGAGAAAGTACCTAAAGGTGCTGTTGTGAGGCCGAAAGGGGATCATCAAGAGGAGACAAGGAGAGTGAGGCCTATTTCAAAGCCACAAGTCCAGAAAGAAAATGACGAACAAAGAATGGGAACAATCCCAAAGCTGTTAGATCATGAGATAGATATGAGTGCTCTAGATGCATATTCAATGCCTTCTccaccaccaccacctccaccacTTTCAAATGAGAGGGTGACTGTTGAACCAACCCCATTCCACAGAGAGGCTAACATCAATCATCCCAAAAAAAGTCCAGTTCCCACTTTTGCAAAAACTTTCACCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGTTTAGGCATGCTGGGGAGTGTGTATAGGGCAGAGCTTCCTGATGGAAAGATACTTGCTGTGAAGAAACTAGATAAGAGAGTTTCTGAACACCAAGCAGATGATGAGTTTCTTGAATTGGTAAACAGTATTGACAGAATCCGGCATGCAAATATTGTTGAGCTTCTTGGGTACTGTGCAGAGTATGGTCAAAGGCTTCTAATTTATGAGTATTGCAGTAATGGGTCGCTGCAGGATGCACTCCATTCAGATGATGAATTCAAAACAAGGCTGTCATGGAATACTCGCATTCGAATAGCACTTGGGGCAGCTAGAGCCTTAGAGTATTTGCATGAGCAGTGTCAGCCACCTGTTGTACACAGAAATTTCAAGATTGCCAACATTCTCCTTGATGATGATGTTTCTGTGCGTGTATCTGATTGTGGTTTGGCTCCATTAATAACTAAAGGTTCTGTAAGTCAGCTCTCAGGACAACTGCTAACAGCTTATGGCTATGGAGCTCCAGAGTTTGAGTCAGGAATTTATACATACCAGAGCGATGTCTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACAGGCCGTCAGTCTTTTGACAAGAAACGCCCTCGAGGGGAGCAGTTTCTGGTGAGGTGGGCTATTCCTCAACTTCATGACATTGATGCGTTATCAAAGATGGTTGATCCTTCTCTAAATGGAAACTACCCTGCTAAATCATTGTCAAATTTTGCAGACATTATTTCTAGATGTGTTCAGTCGGAGCCAGAATTTAGGCCAGCAATGTCAGAGGTTGTCTTGTACTTAATAAATATGATAAGGAAGGAATCTCAGCAAAATGAATCAAATGAATAA 2316 0.4098 MGEERSGSLYKRVKIHGQVLLGFMLICIVQFSLAATDPSDVAAINGLYTALGNPILPGWVSSAGDPCGQGWQGVQCNGSVIQEIVLNGANLGGELGDSLGGFVSIRAIVLNNNHIGGSIPSSLPVTLQHLFLSDNQFTGSIPASLSTLTELTDMSLNNNLLTGEIPDAFESLTQLINLDLSNNNLSGELPPSMENLSALTSVHLQNNNLSGILNVLQDLPLQDLNVENNQFAGPIPPKLLMIPNFRNDGNPFNLNGNATIAPTHAPHSPVIAPPPGRIPTKPTKGPTSAKESNSGKSNKNTKRVVWISISSILVFIIVVLGLLLFVPRCSRRERVDRSSKQHQVGVYGGETQNRREYGDLVQPPNQTEKVPKGAVVRPKGDHQEETRRVRPISKPQVQKENDEQRMGTIPKLLDHEIDMSALDAYSMPSPPPPPPPLSNERVTVEPTPFHREANINHPKKSPVPTFAKTFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELPDGKILAVKKLDKRVSEHQADDEFLELVNSIDRIRHANIVELLGYCAEYGQRLLIYEYCSNGSLQDALHSDDEFKTRLSWNTRIRIALGAARALEYLHEQCQPPVVHRNFKIANILLDDDVSVRVSDCGLAPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSFDKKRPRGEQFLVRWAIPQLHDIDALSKMVDPSLNGNYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLINMIRKESQQNESNE 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00832 771 Gene3D Ribonuclease Inhibitor 38 261 IPR032675 -
Cca10g00832 771 SUPERFAMILY Protein kinase-like (PK-like) 458 756 IPR011009 -
Cca10g00832 771 ProSiteProfiles Protein kinase domain profile. 482 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00832 771 MobiDBLite consensus disorder prediction 266 299 - -
Cca10g00832 771 Pfam Protein tyrosine and serine/threonine kinase 485 754 IPR001245 GO:0004672|GO:0006468
Cca10g00832 771 MobiDBLite consensus disorder prediction 285 299 - -
Cca10g00832 771 SUPERFAMILY L domain-like 36 244 - -
Cca10g00832 771 Gene3D Phosphorylase Kinase; domain 1 448 559 - -
Cca10g00832 771 MobiDBLite consensus disorder prediction 332 404 - -
Cca10g00832 771 PANTHER OS01G0253100 PROTEIN 25 771 IPR045271 GO:0004714|GO:0006468
Cca10g00832 771 MobiDBLite consensus disorder prediction 267 281 - -
Cca10g00832 771 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Cca10g00832 771 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Cca10g00832 771 Gene3D Transferase(Phosphotransferase) domain 1 560 771 - -
Cca10g00832 771 MobiDBLite consensus disorder prediction 374 404 - -
Cca10g00832 771 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 25 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00832 Cca-Chr10 9585512 9592649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00832 26 763 Strubbelig Receptor Gene Family AT4G03390 62.092 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca10g00832 PK_Tyr_Ser-Thr 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00832 - - gmx:100811490 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00832 10 9585512 9592649 Cca10g00832 10 9585512 9592649 ECH
Cca10g00832 10 9585512 9592649 Cca04g01094 04 12240038 12247545 PCT