Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00831 ATGGCTGAGGAAGTGCACGATGCTGGGCTTGCTCCAGATCCCTACCAGATCGACGTCAAGCTTTTTAACCGTTGGAGCTTCGACGATGTCCAGGTAAATGACATTTCCCTTGCTGATTACATCGGCGTGGTGGCATCCAAGCATGCCACGTATGTTCCTCACACTGCTGGTAGGTACTCTCGGTTCAGGAAGGCCCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTCATGATGCATGGTAGAAACAATGGCAAGAAGCTCATGGCCGTGAGGATCATCAAGCATGCCATGGAAATTATTCATTTGTTGACTGACCTGAACCCCATTCAGGTCATTGTCGATGCTGTCATCAACAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTTGTAAGGAGACAGGCTGTGGATATATCACCTCTTCGCCGTGTTAATCAGGCTATATATCTTCTAACAACCGGTGCACGTGAAGCTGCATTCAGAAATATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCCAATCGTTGA 618 0.4725 MAEEVHDAGLAPDPYQIDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00831 205 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 205 IPR000235 GO:0006412
Cca10g00831 205 Pfam Ribosomal protein S7p/S5e 64 205 IPR023798 -
Cca10g00831 205 PANTHER RIBOSOMAL PROTEIN S7 11 205 IPR000235 GO:0006412
Cca10g00831 205 SUPERFAMILY Ribosomal protein S7 20 205 IPR036823 -
Cca10g00831 205 ProSitePatterns Ribosomal protein S7 signature. 71 97 IPR020606 GO:0003723|GO:0003735|GO:0006412
Cca10g00831 205 PANTHER 40S RIBOSOMAL PROTEIN S5 11 205 - -
Cca10g00831 205 TIGRFAM uS7_euk_arch: ribosomal protein uS7 19 205 IPR005716 GO:0003735|GO:0006412|GO:0015935
Cca10g00831 205 Gene3D Ribosomal protein S7 domain 5 205 IPR036823 -
Cca10g00831 205 CDD uS7_Eukaryote 20 205 IPR005716 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00831 Cca-Chr10 9560687 9562742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00831 18 205 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 92.105 1.12e-130 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00831 K02989 - gmx:100803239 365.925