Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00820 ATGCATGGTGAGGAAGTTTTGATGTGTTGGCATGTCCAGGTTGCTGCACAACAGGGTACATATCTGGCTAGATGCTTTATCAGCCGGAATCAGTGTGCAGAGAATCCTGAAGGTCCAATAAGATTTGGAAAATCCGGACGCCATAAGTTTCGTCCCTTCAGGTATAAGCATTTTGGGCAATTTGCTCCTCTTGGTGGAGAGCAGGCAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGACACAGCACTCAATGGCTCTGGTATTCTATATATGCAAGCAAACAAGTGAGCTGGCGCACAAGGGTGTTAGTCATCTCAGATTGGACAAGAAGATTCGTCTTTGGTAGAGATTCTAGTCGTATATAA 369 0.4607 MHGEEVLMCWHVQVAAQQGTYLARCFISRNQCAENPEGPIRFGKSGRHKFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSIYASKQVSWRTRVLVISDWTRRFVFGRDSSRI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00820 122 PANTHER NADH DEHYDROGENASE 12 122 IPR045024 GO:0003954|GO:0006116
Cca10g00820 122 Gene3D - 9 121 - -
Cca10g00820 122 PANTHER - 12 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00820 Cca-Chr10 9440443 9441803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00820 13 122 Chloroplast and Mitochondria Gene Families AT4G21490 79.091 9.70e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00820 K03885 - ccaj:109817627 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00820 10 9440443 9441803 Cca10g00820 10 9440443 9441803 ECH