Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca10g00819 | ATGGCAGAGGCAACAACAAATAAACTTGTAGAGAAATCTCAAGTTGCTCCAGTTACAACCAAAACCACGTCTCTTCCCCTATCATTCCTGGACTTAACTTATACAGGTTCTCGTTACTATGTGAGACGCCAATTCTTCTATGACTTTCCCCATCCCACACACATTTTCTATGAAACTAAACTCCCCTCTCTCAAACACACACTCTCTCTTACCCTTCAACATTTTTACCCTCTCGCTGGAAATCTCCTTTGTCCCCCACCACCCCACAAACCCTTCATTCGCTGCACCGATCATGACTCTGTCACCTTAACTGTCACTGAGTCCCAAGCTGATTTCAACCTTCTCTCATCCAACCAACCCAAAAGTCTCAAAGATTTGGGTAAATTGGTTCCCAACTTGTCATGCACAACTGTGCCTAATGACACGTTCGTTTCCCCATTGTTGGCCCTGCAAATCACGGTTTTCCCCAACTGTGGCCTTTGCATCTCGATCACGTATTGCCATGCAATCATGGATGGTAGGTCTTGCTGTTATTTCATGAAGTGTTGGTCTTCCATTTGTCGAAGTGGTGGAGTTGATTTGACACTTTTGGAGATCTCACCGCCATGCTTCGATAGGGAAGTGTTGAGAGACACCAAAGGACTCGAGGCCATTTTCTTGAGAGACTACTTTGAAGCGAGGTCGACATGGAAGGTTGGTCATGGTCCAATTCCTAAACATGGAATTGATGATGAGGGCTATGTTAAGGCAACGATTACTTTTGGAAGAGATGATATTGAGGCCATGAAAAAATGGGCGTTGAATCAGTGGAAAAAAGATGATAAATTTCAAGCGCCGCAATATCTATCAAAATTTGTGGTGACGTCTGCTTTCTTGTGGGTTAGCTTGGTTAAAGCAATATATAGAAACGACAACGAAGAAGAACAAGTAGAGATGATAGAGGACTACTTCCGTTTTGCAGCAGATTGTAGAGATCGCCTTGAGTACCCGATACCAGCGACTTACTTTGGAAATTGCTTGGCGAGATGTTATGTAGGGCTGAAGAGAAAGGACCTAAAGGGAGAAGGTGGTTTTGTGAACGCAGTGAAGGCCATTGTAAGGACAATAGCTGATATGAAAACTGAACCTCTGAAAGGTGCAGAAAATTGGAAGGAATTGTTTATAAAGACGTTTCTACCGGGACGTTTAGTGTTAGTTACAGGATCACCTAAGTTCAATGTTTACGAGACTGACTTTGGATTTGGAAAACCTACCAAAGTCGACGTTGCACATTCCATTCATGGTGTTCTACCGGGACGTTTAGTGTTAGTTACAGGATCACCTAAGTTCAATGTTTACGAGACTGACTTTGGATTTGGAAAACCTACCAAAGTCGACGTTGCACATTCCAAAGCAAAGCCACAGTGTAGGGTTCTGCCATGGCTGCCACTGTTATCAGCCGTTGCAAACAGAAGTAGCATTATGGATCAAGGGAGGCAGGTATTCACAGTGGACCTTCTGGAACGATATGCGGCAAAAGGGCATGGAGTTATCACTTGCATGGCTGCTGGGAATGATGTCATTGTCATTGGAACCAGCAGAGGATGGGTCATCAGGCATGATTTTGGGGTTGGCAATTCATTTGAGATTGATCTCACTGTGGGTCGTCCTGGGGACCAGTCAATTCATAGGGTTTTTGTTGATCCTGGAGGGAGTCACTGTATTGCCACTGTAATTGGTCCTGGAGGTGCTGAAACTTTCTACACTCATGCCAAATGGACCAAGCCACGAATTTTGAGCAAGCTGAAAGGTCTTGTTGTAAATGCTGTTGCATGGAACAAGCAACAGATAACAGAAGTTTCCACAAAGGAAGTTATCCTTGGTACAGAAAATGGTCAACTTCATGAGCTGGCCGTGGACGAGAAGGACAAGAAAGAGAAGTATATCAAGTTTCTCTATGAATTAACAGAACTTCCAGAAGCTTTTATGGGCTTGCAGATGGAAACAGCTAGCTTGATTAATGGGACTAGATATTATGTGATGGCCGTTACTCCTACTCGGCTTTACTCTTTTACTGGCTTTGGCTCACTGGAAACGGTTTATTCAGGTTATTTAGATCGTACGGTGCACTTTATGGAACTTCCTGGTGACATACCAAACAGGCAAGTAAGCTCTATTGAATTGCATTTTTTCCTTAAGCAACGAAGAGCCGTACATTTTGCATGGCTTTCTGGAGCTGGTATTTACCATGGTGGCTTAAATTTTGGAGGACAGCAGAGCTCTTCAAGTGGAAATGAGAATTTTATTGAGAACAAGGCTCTTTTGGACTACTCCAAATTGTCTGAAGGAGCTGAAGTAGTTAAACCAAGTTCAATGGTGTTGTCTGAATTCCATTTCTTGTTGCTTTTAAGGAATAAGGTCAAGGTTGTAAATAGAATTAGTGAGAACATCATTGAGGAACTTCAGTTTGATCAAACGTCTGATTCAGCATCAAAGGGTATTCTAGGATTATGTAGTGATGCCACAGCTGGTTTATTTTATGCATATGATCAAAACTCCATATTTCAGGTTTCTATCAATGATGAAGGCCGAGACATGTGGAAAGTATATCTTGACATGAATGATTATGCTGCTGCTTTGGCAAATTGTCGTGATCCTTTCCAAAGGGACCAAGTATATTTAGTGCAGGCTGAAGCTGCGTTTTCTTCTAAAGATTATTTTAGAGCTGCATCATTCTATGCCAAAATCAATTATATTTTATCATTTGAAGAGGTCACTTTGAAGTTCATCAGCGCTGGTGAACAGGATGCTTTGAGAACTTTCTTATTGAGGAAGCTTGATAGTTTAGAAAAGAGTGACAAATGCCAAATAACAATGATATCTACCTGGACAACTGAATTATACTTGGACAAGATAAATCGACTGCTCTTGGAAGATGACTCTGCATTGGAGAAAAGCAACTCAGAGTACCAATCAACTATTGAAGAGTTTCGTGCTTTTCTCAGTGACAGCAAGGATGTATTGGATGAAGCAACTACAATGAAACTTTTAAAGAGTTATGGAAGGGTTGAAGAATTGGTTTATTTTGCTAGCTTAAAAGGGCAGTATGAGATTGTAGTTCACCATTACATTCAGCAAGGAGAAGCAAAAAAAGCATTGGAAGTTATTCAGAAGCCTTCTGTACCTATAGATCTTCAGTATAAGTTTGCTCCGGACCTTATTGCCCTTGATGCATATGAAACCGTGGAATCATGGATAGCTACAAAGAATCTGAATCCAAGGAAACTGATTCCTGCAATGATGCGTTATTCAAGTGAACCACATGCAAAGAATGAGACACATGAAGTCATTAAATATCTTGAATATTGTGTTCATCGATTACATAATGAAGATCCTGGAGTTCATAATCTGCTACTTTCTTTATATGCAAAACAGGAAGATGATAGTGCACTTCTACGTTTCCTACAATGCAAATTTGGGAAAGGACCAGAAAATGGTCCTGAGTTCTTCTATGATCCTAAGTATGCTTTGCGTCTTTGCCTCAAGGAAAAACGAATGCGTGCATGTGTTCATATATACAGCATGATGTCTATGCATGAAGAAGCAGTTGCTCTTGCCCTACAGTTATGTCTTATGGGGATGCTGCAAGACCAGCCAATTGTTTCACGGATGCTTTTATTCTTTATGCAATAG | 3672 | 0.4129 | MAEATTNKLVEKSQVAPVTTKTTSLPLSFLDLTYTGSRYYVRRQFFYDFPHPTHIFYETKLPSLKHTLSLTLQHFYPLAGNLLCPPPPHKPFIRCTDHDSVTLTVTESQADFNLLSSNQPKSLKDLGKLVPNLSCTTVPNDTFVSPLLALQITVFPNCGLCISITYCHAIMDGRSCCYFMKCWSSICRSGGVDLTLLEISPPCFDREVLRDTKGLEAIFLRDYFEARSTWKVGHGPIPKHGIDDEGYVKATITFGRDDIEAMKKWALNQWKKDDKFQAPQYLSKFVVTSAFLWVSLVKAIYRNDNEEEQVEMIEDYFRFAADCRDRLEYPIPATYFGNCLARCYVGLKRKDLKGEGGFVNAVKAIVRTIADMKTEPLKGAENWKELFIKTFLPGRLVLVTGSPKFNVYETDFGFGKPTKVDVAHSIHGVLPGRLVLVTGSPKFNVYETDFGFGKPTKVDVAHSKAKPQCRVLPWLPLLSAVANRSSIMDQGRQVFTVDLLERYAAKGHGVITCMAAGNDVIVIGTSRGWVIRHDFGVGNSFEIDLTVGRPGDQSIHRVFVDPGGSHCIATVIGPGGAETFYTHAKWTKPRILSKLKGLVVNAVAWNKQQITEVSTKEVILGTENGQLHELAVDEKDKKEKYIKFLYELTELPEAFMGLQMETASLINGTRYYVMAVTPTRLYSFTGFGSLETVYSGYLDRTVHFMELPGDIPNRQVSSIELHFFLKQRRAVHFAWLSGAGIYHGGLNFGGQQSSSSGNENFIENKALLDYSKLSEGAEVVKPSSMVLSEFHFLLLLRNKVKVVNRISENIIEELQFDQTSDSASKGILGLCSDATAGLFYAYDQNSIFQVSINDEGRDMWKVYLDMNDYAAALANCRDPFQRDQVYLVQAEAAFSSKDYFRAASFYAKINYILSFEEVTLKFISAGEQDALRTFLLRKLDSLEKSDKCQITMISTWTTELYLDKINRLLLEDDSALEKSNSEYQSTIEEFRAFLSDSKDVLDEATTMKLLKSYGRVEELVYFASLKGQYEIVVHHYIQQGEAKKALEVIQKPSVPIDLQYKFAPDLIALDAYETVESWIATKNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEYCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGPENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQLCLMGMLQDQPIVSRMLLFFMQ | 1223 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca10g00819 | 1223 | Pfam | Region in Clathrin and VPS | 1090 | 1200 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca10g00819 | 1223 | Pfam | Transferase family | 19 | 420 | - | - | |
| Cca10g00819 | 1223 | Gene3D | - | 426 | 476 | IPR023213 | - | |
| Cca10g00819 | 1223 | Gene3D | - | 7 | 234 | IPR023213 | - | |
| Cca10g00819 | 1223 | Gene3D | - | 244 | 425 | IPR023213 | - | |
| Cca10g00819 | 1223 | PANTHER | BNACNNG33440D PROTEIN | 488 | 1202 | - | - | |
| Cca10g00819 | 1223 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN | 488 | 1202 | - | - | |
| Cca10g00819 | 1223 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1080 | 1223 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca10g00819 | 1223 | Pfam | Pep3/Vps18/deep orange family | 740 | 895 | IPR007810 | - |
Showing 1 to 9 of 9 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca10g00819 | K20181 | - | gmx:100793073 | 1335.47 |
Showing 1 to 1 of 1 entries