Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00819 ATGGCAGAGGCAACAACAAATAAACTTGTAGAGAAATCTCAAGTTGCTCCAGTTACAACCAAAACCACGTCTCTTCCCCTATCATTCCTGGACTTAACTTATACAGGTTCTCGTTACTATGTGAGACGCCAATTCTTCTATGACTTTCCCCATCCCACACACATTTTCTATGAAACTAAACTCCCCTCTCTCAAACACACACTCTCTCTTACCCTTCAACATTTTTACCCTCTCGCTGGAAATCTCCTTTGTCCCCCACCACCCCACAAACCCTTCATTCGCTGCACCGATCATGACTCTGTCACCTTAACTGTCACTGAGTCCCAAGCTGATTTCAACCTTCTCTCATCCAACCAACCCAAAAGTCTCAAAGATTTGGGTAAATTGGTTCCCAACTTGTCATGCACAACTGTGCCTAATGACACGTTCGTTTCCCCATTGTTGGCCCTGCAAATCACGGTTTTCCCCAACTGTGGCCTTTGCATCTCGATCACGTATTGCCATGCAATCATGGATGGTAGGTCTTGCTGTTATTTCATGAAGTGTTGGTCTTCCATTTGTCGAAGTGGTGGAGTTGATTTGACACTTTTGGAGATCTCACCGCCATGCTTCGATAGGGAAGTGTTGAGAGACACCAAAGGACTCGAGGCCATTTTCTTGAGAGACTACTTTGAAGCGAGGTCGACATGGAAGGTTGGTCATGGTCCAATTCCTAAACATGGAATTGATGATGAGGGCTATGTTAAGGCAACGATTACTTTTGGAAGAGATGATATTGAGGCCATGAAAAAATGGGCGTTGAATCAGTGGAAAAAAGATGATAAATTTCAAGCGCCGCAATATCTATCAAAATTTGTGGTGACGTCTGCTTTCTTGTGGGTTAGCTTGGTTAAAGCAATATATAGAAACGACAACGAAGAAGAACAAGTAGAGATGATAGAGGACTACTTCCGTTTTGCAGCAGATTGTAGAGATCGCCTTGAGTACCCGATACCAGCGACTTACTTTGGAAATTGCTTGGCGAGATGTTATGTAGGGCTGAAGAGAAAGGACCTAAAGGGAGAAGGTGGTTTTGTGAACGCAGTGAAGGCCATTGTAAGGACAATAGCTGATATGAAAACTGAACCTCTGAAAGGTGCAGAAAATTGGAAGGAATTGTTTATAAAGACGTTTCTACCGGGACGTTTAGTGTTAGTTACAGGATCACCTAAGTTCAATGTTTACGAGACTGACTTTGGATTTGGAAAACCTACCAAAGTCGACGTTGCACATTCCATTCATGGTGTTCTACCGGGACGTTTAGTGTTAGTTACAGGATCACCTAAGTTCAATGTTTACGAGACTGACTTTGGATTTGGAAAACCTACCAAAGTCGACGTTGCACATTCCAAAGCAAAGCCACAGTGTAGGGTTCTGCCATGGCTGCCACTGTTATCAGCCGTTGCAAACAGAAGTAGCATTATGGATCAAGGGAGGCAGGTATTCACAGTGGACCTTCTGGAACGATATGCGGCAAAAGGGCATGGAGTTATCACTTGCATGGCTGCTGGGAATGATGTCATTGTCATTGGAACCAGCAGAGGATGGGTCATCAGGCATGATTTTGGGGTTGGCAATTCATTTGAGATTGATCTCACTGTGGGTCGTCCTGGGGACCAGTCAATTCATAGGGTTTTTGTTGATCCTGGAGGGAGTCACTGTATTGCCACTGTAATTGGTCCTGGAGGTGCTGAAACTTTCTACACTCATGCCAAATGGACCAAGCCACGAATTTTGAGCAAGCTGAAAGGTCTTGTTGTAAATGCTGTTGCATGGAACAAGCAACAGATAACAGAAGTTTCCACAAAGGAAGTTATCCTTGGTACAGAAAATGGTCAACTTCATGAGCTGGCCGTGGACGAGAAGGACAAGAAAGAGAAGTATATCAAGTTTCTCTATGAATTAACAGAACTTCCAGAAGCTTTTATGGGCTTGCAGATGGAAACAGCTAGCTTGATTAATGGGACTAGATATTATGTGATGGCCGTTACTCCTACTCGGCTTTACTCTTTTACTGGCTTTGGCTCACTGGAAACGGTTTATTCAGGTTATTTAGATCGTACGGTGCACTTTATGGAACTTCCTGGTGACATACCAAACAGGCAAGTAAGCTCTATTGAATTGCATTTTTTCCTTAAGCAACGAAGAGCCGTACATTTTGCATGGCTTTCTGGAGCTGGTATTTACCATGGTGGCTTAAATTTTGGAGGACAGCAGAGCTCTTCAAGTGGAAATGAGAATTTTATTGAGAACAAGGCTCTTTTGGACTACTCCAAATTGTCTGAAGGAGCTGAAGTAGTTAAACCAAGTTCAATGGTGTTGTCTGAATTCCATTTCTTGTTGCTTTTAAGGAATAAGGTCAAGGTTGTAAATAGAATTAGTGAGAACATCATTGAGGAACTTCAGTTTGATCAAACGTCTGATTCAGCATCAAAGGGTATTCTAGGATTATGTAGTGATGCCACAGCTGGTTTATTTTATGCATATGATCAAAACTCCATATTTCAGGTTTCTATCAATGATGAAGGCCGAGACATGTGGAAAGTATATCTTGACATGAATGATTATGCTGCTGCTTTGGCAAATTGTCGTGATCCTTTCCAAAGGGACCAAGTATATTTAGTGCAGGCTGAAGCTGCGTTTTCTTCTAAAGATTATTTTAGAGCTGCATCATTCTATGCCAAAATCAATTATATTTTATCATTTGAAGAGGTCACTTTGAAGTTCATCAGCGCTGGTGAACAGGATGCTTTGAGAACTTTCTTATTGAGGAAGCTTGATAGTTTAGAAAAGAGTGACAAATGCCAAATAACAATGATATCTACCTGGACAACTGAATTATACTTGGACAAGATAAATCGACTGCTCTTGGAAGATGACTCTGCATTGGAGAAAAGCAACTCAGAGTACCAATCAACTATTGAAGAGTTTCGTGCTTTTCTCAGTGACAGCAAGGATGTATTGGATGAAGCAACTACAATGAAACTTTTAAAGAGTTATGGAAGGGTTGAAGAATTGGTTTATTTTGCTAGCTTAAAAGGGCAGTATGAGATTGTAGTTCACCATTACATTCAGCAAGGAGAAGCAAAAAAAGCATTGGAAGTTATTCAGAAGCCTTCTGTACCTATAGATCTTCAGTATAAGTTTGCTCCGGACCTTATTGCCCTTGATGCATATGAAACCGTGGAATCATGGATAGCTACAAAGAATCTGAATCCAAGGAAACTGATTCCTGCAATGATGCGTTATTCAAGTGAACCACATGCAAAGAATGAGACACATGAAGTCATTAAATATCTTGAATATTGTGTTCATCGATTACATAATGAAGATCCTGGAGTTCATAATCTGCTACTTTCTTTATATGCAAAACAGGAAGATGATAGTGCACTTCTACGTTTCCTACAATGCAAATTTGGGAAAGGACCAGAAAATGGTCCTGAGTTCTTCTATGATCCTAAGTATGCTTTGCGTCTTTGCCTCAAGGAAAAACGAATGCGTGCATGTGTTCATATATACAGCATGATGTCTATGCATGAAGAAGCAGTTGCTCTTGCCCTACAGTTATGTCTTATGGGGATGCTGCAAGACCAGCCAATTGTTTCACGGATGCTTTTATTCTTTATGCAATAG 3672 0.4129 MAEATTNKLVEKSQVAPVTTKTTSLPLSFLDLTYTGSRYYVRRQFFYDFPHPTHIFYETKLPSLKHTLSLTLQHFYPLAGNLLCPPPPHKPFIRCTDHDSVTLTVTESQADFNLLSSNQPKSLKDLGKLVPNLSCTTVPNDTFVSPLLALQITVFPNCGLCISITYCHAIMDGRSCCYFMKCWSSICRSGGVDLTLLEISPPCFDREVLRDTKGLEAIFLRDYFEARSTWKVGHGPIPKHGIDDEGYVKATITFGRDDIEAMKKWALNQWKKDDKFQAPQYLSKFVVTSAFLWVSLVKAIYRNDNEEEQVEMIEDYFRFAADCRDRLEYPIPATYFGNCLARCYVGLKRKDLKGEGGFVNAVKAIVRTIADMKTEPLKGAENWKELFIKTFLPGRLVLVTGSPKFNVYETDFGFGKPTKVDVAHSIHGVLPGRLVLVTGSPKFNVYETDFGFGKPTKVDVAHSKAKPQCRVLPWLPLLSAVANRSSIMDQGRQVFTVDLLERYAAKGHGVITCMAAGNDVIVIGTSRGWVIRHDFGVGNSFEIDLTVGRPGDQSIHRVFVDPGGSHCIATVIGPGGAETFYTHAKWTKPRILSKLKGLVVNAVAWNKQQITEVSTKEVILGTENGQLHELAVDEKDKKEKYIKFLYELTELPEAFMGLQMETASLINGTRYYVMAVTPTRLYSFTGFGSLETVYSGYLDRTVHFMELPGDIPNRQVSSIELHFFLKQRRAVHFAWLSGAGIYHGGLNFGGQQSSSSGNENFIENKALLDYSKLSEGAEVVKPSSMVLSEFHFLLLLRNKVKVVNRISENIIEELQFDQTSDSASKGILGLCSDATAGLFYAYDQNSIFQVSINDEGRDMWKVYLDMNDYAAALANCRDPFQRDQVYLVQAEAAFSSKDYFRAASFYAKINYILSFEEVTLKFISAGEQDALRTFLLRKLDSLEKSDKCQITMISTWTTELYLDKINRLLLEDDSALEKSNSEYQSTIEEFRAFLSDSKDVLDEATTMKLLKSYGRVEELVYFASLKGQYEIVVHHYIQQGEAKKALEVIQKPSVPIDLQYKFAPDLIALDAYETVESWIATKNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEYCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGPENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQLCLMGMLQDQPIVSRMLLFFMQ 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00819 1223 Pfam Region in Clathrin and VPS 1090 1200 IPR000547 GO:0006886|GO:0016192
Cca10g00819 1223 Pfam Transferase family 19 420 - -
Cca10g00819 1223 Gene3D - 426 476 IPR023213 -
Cca10g00819 1223 Gene3D - 7 234 IPR023213 -
Cca10g00819 1223 Gene3D - 244 425 IPR023213 -
Cca10g00819 1223 PANTHER BNACNNG33440D PROTEIN 488 1202 - -
Cca10g00819 1223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 488 1202 - -
Cca10g00819 1223 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1080 1223 IPR000547 GO:0006886|GO:0016192
Cca10g00819 1223 Pfam Pep3/Vps18/deep orange family 740 895 IPR007810 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00819 Cca-Chr10 9420257 9439022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00819 11 417 Monolignol Biosynthesis Gene Families AT5G48930 23.888 7.25e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00819 K20181 - gmx:100793073 1335.47