Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00802 ATGGCTGATGAGATGAAACTTGACCAAGTGAAGATCATAGAGCGGTGTGAAGTAGCACCACCACAACACTCACTTGCCTCTACCACCCTTCCCCTCACTTTCTTTGATATTCCATGGTTCTTATGCCACCCCGTCAAGCGCATCTTCTTCTACGAGTTTCACCACCCCACCAACCACTTCCTCCAAACAGCACTTCCCACTCTCAAACACTCTCTCTCCCTCACTCTCCAACACTTCTTCCCCTTCGCCGCCAACCTCATCGCTCCGCCGCAGCTCCACCTCTCTCACATCCGCTACCTCCCCGGCGACTCCCTCTCCTTCACCGTCGCGGAGTCCACCGCAGACTTCACCCTCCTCACCACCGATTCCCCACAATACGTTCGAAACTGGCACCCTCTTATCCCTACCTTATCTCCCCCACGTGTGGAGCAAGACGGCACACGTGTGTTCCCTCTCATGGCCATTCAGGTCACCGTTCTACCCAACTCAGGCTTCACCATCTCTCTCACGTTCAACCACCTTGCTGGGGATGGCAGATCGCTTCATCATTTCATCAAATTTTGGGCCTCTCTTTGCAAAGCAAGAGGTGACATGGCTAAAGCTTCTCTTGAAACCCCTTTGTCTCTTCCTTCGCACGAGAGGGACAAAGTCAAAGATCCGAAGGGGCTTAAGCGCATTTATTTTCAAGAGCTTGAACACAGTGACTCCAAAAGGATGGAGTTTGCGGGGCTCGTGCAAGTTTTTTCCACTGACAATGTTCGCTTCACTTTTGCATTGAGCCGTGAACACATTGAGAAACTCAAGAAGTGGTTCTCTCTTAAATGTGGCACGTTGCACATATCAACCTTTGTGGTGACGTGCTCCTTGGTTTGGATTTGCATGATTAGGTTTGAGGAAAGCAAAGGCAATTGTGTTGACTATGATGAACCATGCTACTTTGTGTTTCTTGCAGATTGTCGTGATCTTCCTGAATTTTCGTTACCTTGTACGTACTTCGGGAATTGTCTAGCCTCTTGCAGTGTGGCAATGAAGAGGAGTGAGTTAGTGGCAGAAAATGGGATTGTTGGGGTGGCAAATGCAATTGAAAGGGAAATTAGAGATGTGAAGAGTGATGCTTTGAGAAATGCTGAAAAGTTGATATCTGAATATAGAGAGTTAGGGAAAGCAGGTAAATCTTTGTTGCTAGTTGCGGGTTCACCAAAGTTGGGTGTGTACGAGAGTGATTTTGGATGGGGTAAGCCTAAGAAATCCGAAGCAGCGCATATTGAGTCGTCAGGATCCTTTTCTCTTTCAGATTCTAAAGACGGAAAAGGAGGAATCGAGGTTGGATTGGCACTTGAAAGGCTTCGGGTGAATGAGTTCTTCACTATCTTGCAAGAGCAACTTCATGACATTAATAAATTCTGA 1407 0.4755 MADEMKLDQVKIIERCEVAPPQHSLASTTLPLTFFDIPWFLCHPVKRIFFYEFHHPTNHFLQTALPTLKHSLSLTLQHFFPFAANLIAPPQLHLSHIRYLPGDSLSFTVAESTADFTLLTTDSPQYVRNWHPLIPTLSPPRVEQDGTRVFPLMAIQVTVLPNSGFTISLTFNHLAGDGRSLHHFIKFWASLCKARGDMAKASLETPLSLPSHERDKVKDPKGLKRIYFQELEHSDSKRMEFAGLVQVFSTDNVRFTFALSREHIEKLKKWFSLKCGTLHISTFVVTCSLVWICMIRFEESKGNCVDYDEPCYFVFLADCRDLPEFSLPCTYFGNCLASCSVAMKRSELVAENGIVGVANAIEREIRDVKSDALRNAEKLISEYRELGKAGKSLLLVAGSPKLGVYESDFGWGKPKKSEAAHIESSGSFSLSDSKDGKGGIEVGLALERLRVNEFFTILQEQLHDINKF 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00802 468 Gene3D - 9 243 IPR023213 -
Cca10g00802 468 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 10 466 - -
Cca10g00802 468 Pfam Transferase family 9 454 - -
Cca10g00802 468 Gene3D - 249 464 IPR023213 -
Cca10g00802 468 PANTHER - 10 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00802 Cca-Chr10 9278800 9280424 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00802 48 455 Monolignol Biosynthesis Gene Families AT5G48930 23.380 5.96e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00802 - - gmx:100797294 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00802 10 9278800 9280424 Cca10g00802 10 9278800 9280424 ECH