Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00799 ATGAATTGCAACAACAACACTTTGACAGTTATAGATGGATGCCAAGTTGCTCCACCACCAGGTTCAGTTCCCGCAACCACTCTTCCCCTCACCTTCTTCGACATTCCATGGTTCTGTTGTCTCGTCCCCGTGCAACGCATCTTCTTCTACGAGTTTCACCACCCCACCAACCACTTCCTCCAAACAGCACTTCCATCTCTCAAACACTCTCTCTCCCTCACTCTCCAACACTTCTTCCCCTTCGCCGCCAACCTCATCGTTCCGCCGCAACCCCACCTCTCTCACTTCCGCTACCTCCCCGGCGACTCCCTCCCCTTCACCGTCGCAGAGTCCACCGCCGACTTCCCCCTCCTCACCTCCGATTCCCCACAAGACGTTCGAAACTGGCACCCTCTCGTTCCCACGCTTCCTTCACCACGTGTTGAGCCAGATGGCACACGTGCGTTCCCTCTCATGGCCATTCAGGTCACGGTTCTACCAAACTCCGGCTTCACCATCTCTCTCACGTTCAATCACCTTGCTGGGGATGGCAAATCGCTTCACCATTTCATCAAGTTTTGGGCCTCTCTTTGCAAGGCAAGAGGCGAAACCCCTTTGTCTCTTCCTTCACACGAGAGGGACAAAGTTAAAGATCCGAAGGGTCTCAAGCTCCTCTACTTGCAAGAACTCGAAAACCATGACTCCAATATGATGGAGATTGCAAGCGTGGCGCCACATGTTTTCGTTAACAAGGTTCGTTCTACTTTTGTATTGAGCCGTGAACAAGTTGAGAGACTCAAGAAATGGGTCTCTCTTAAATATTGTGCCAACAACGATTCCGGGGCATCACCTCACATATCAACCTTTGTGGTGACGTGCTCCTTGGTTTGGGTTTGCATGATTAGGTCAGAGGAGAGCAAAGGCAATTCTGATGATGAACTGTGCTATGTGGTGTTTCTAGCGGATTGTCGTGATAGTCCTGAATTTTCATTGCCTTCAACGTACTTTGGGAATTGTCTAGCCTCTTGTATTGTGGGAATGAAGAGGAGTGTGGTGGTGGGAGAAAATGGGATTATTGAGGTAGCAAAAACTATTGAAAGGAGAGTTAGAGATTTGAAGAGTGATGTTTTGACAAGGGCTGAGACACTGATGTCAGATTATGGAGAGTTGTGGAAACCGGGTAAATCTGTGGTTGTGGTTGCAGGCTCACCCAAACTCACCATGTACCAGACTGATTTTGGATGGGGTAAGCCAAAGAAAACTGACGCAGTACATATTGATGCGGGAAAAATGATTTCTCTTTCTGATTGTAGAGACAAAGATGGTGGGATTGAGGTTGGATTGGCACTTGACAAGAGTCAAATGAATAATTTCAACAACATATTGGAAGAACAACTTAATATTACAGTTTGTGAATGA 1398 0.4778 MNCNNNTLTVIDGCQVAPPPGSVPATTLPLTFFDIPWFCCLVPVQRIFFYEFHHPTNHFLQTALPSLKHSLSLTLQHFFPFAANLIVPPQPHLSHFRYLPGDSLPFTVAESTADFPLLTSDSPQDVRNWHPLVPTLPSPRVEPDGTRAFPLMAIQVTVLPNSGFTISLTFNHLAGDGKSLHHFIKFWASLCKARGETPLSLPSHERDKVKDPKGLKLLYLQELENHDSNMMEIASVAPHVFVNKVRSTFVLSREQVERLKKWVSLKYCANNDSGASPHISTFVVTCSLVWVCMIRSEESKGNSDDELCYVVFLADCRDSPEFSLPSTYFGNCLASCIVGMKRSVVVGENGIIEVAKTIERRVRDLKSDVLTRAETLMSDYGELWKPGKSVVVVAGSPKLTMYQTDFGWGKPKKTDAVHIDAGKMISLSDCRDKDGGIEVGLALDKSQMNNFNNILEEQLNITVCE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00799 465 PANTHER - 9 461 - -
Cca10g00799 465 Gene3D - 8 236 IPR023213 -
Cca10g00799 465 Gene3D - 242 462 IPR023213 -
Cca10g00799 465 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 9 461 - -
Cca10g00799 465 Pfam Transferase family 20 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00799 Cca-Chr10 9263899 9265680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00799 51 457 Monolignol Biosynthesis Gene Families AT5G48930 21.839 1.46e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00799 - - gmx:100797294 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00799 10 9263899 9265680 Cca10g00799 10 9263899 9265680 ECH