Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00790 ATGCATCTCTGCAATAGCTTTCCTTCAGAATTCTCAAATATCGTCAAACAAATGGAAGTGCGAAGAGCACACAAGCTTGTTGAGAAATCTCAGGTTGCTTCAGCATCATCAGCAACAACCTCGTCGCTTCCCCTCTCTTTCCTTGACTTGCCCTTAGCCGGTCCTATTTACGTCAAACGCCAATTTTTCTATCATTTTTCCCATTCCACACAACATTTCTGTGAAACCACACTCCCCACTCTCAAACACTCTCTCTCTCTTACCCTTCAACATTTTTTCCCTCTCGCTGGAAATCTCCTCTGTCCACCACCACCCCACAAACCCTTCATTCGCTGCACCGATCATGACTCTGTCACCTTCACCATCATTGAGTCCCAAGCTGATTTCCAACTTCTCTCATCCAACCACCCCAAAAGTCTCAAAGACTTGGATCACTTGGTTCCTACGTTGACATTCACAAACGTGCATGATGATGACACGTTCACTTTCCCTTTAGTGGCATTGCAAGTCACAGTTTTCCCCAACCATGGCCTTTGCATCGCCATCACATATTGTCATGTGATGGATGGTAAGTGTTGCAGTCATTTCATGAAGTGTTGGTCTTCCATTTGTCGAAGCGGTGGCGTTGACTTGACACTTGTGGAGAAGTCTCCACCGTGCTTTGCTAGGGGAGTGTTGAAGGACCCCAATGGACTCGAGGCCATTTTCTTAAGAGACTATTTTGAAGAGAGGTCAACTTGGAAGGAAAAACTCATTGGTCAAACTTATAAAAGTTCCGGTGGTGATGCTGATGAGGACTTTGTTAAGGCAACGATTGTTTTTAGAAGAGATGACATCGAGAGGCTGAAAAGATGGGTGTTGGACCAGTGGAAGGAAAGTGAGGAATTCAACGTGCCACAATATGTATCAAAATTTGTGGTGACGTGTGCTTTTGTGTGGGCTTGTTCGGTTAGAACAAGATGCAGAAATGATGAAGAAGAAAAGGAGAAAGAGGAGTATTTTCGTTTTGCTGCAGATTGCAGAGATCGCCTTGAGTATCCTGTGCCAAAAACATATTTTGGAAACTGCTTAACGTTATGTTATGCAATGCTAAAGAGAAAGGATCTCAAGGGAGAGAGTGGTTTTGTGAATGCGGTCAAGGCCATTGAAAAGGCATTGACTGATATGAGAAGTGAACCCTTTAAAGATGCAGAAAACTGGAGGGCGTCGTTTAAGAAGATGTTTGTGTTGGGAAGTACATTGCTAGTTACAGGGTCACCCAACTTCACTGTTTATGAGACTGATTTTGGATTTGGAAGGCCTAACAAAGTGGAAATGGTGCATCCCTTTAAGTGCATGTCTCTAACTGAAAGTGGAGATGAGGAAGGAGGACTTGAGGTTGGCTTTGTGTGTAGAAGTACCGAATTTGAATATTTCGTTTCTGTCATCGAACAAGAACTTAAAGCTTCCAAATCCTAA 1458 0.4348 MHLCNSFPSEFSNIVKQMEVRRAHKLVEKSQVASASSATTSSLPLSFLDLPLAGPIYVKRQFFYHFSHSTQHFCETTLPTLKHSLSLTLQHFFPLAGNLLCPPPPHKPFIRCTDHDSVTFTIIESQADFQLLSSNHPKSLKDLDHLVPTLTFTNVHDDDTFTFPLVALQVTVFPNHGLCIAITYCHVMDGKCCSHFMKCWSSICRSGGVDLTLVEKSPPCFARGVLKDPNGLEAIFLRDYFEERSTWKEKLIGQTYKSSGGDADEDFVKATIVFRRDDIERLKRWVLDQWKESEEFNVPQYVSKFVVTCAFVWACSVRTRCRNDEEEKEKEEYFRFAADCRDRLEYPVPKTYFGNCLTLCYAMLKRKDLKGESGFVNAVKAIEKALTDMRSEPFKDAENWRASFKKMFVLGSTLLVTGSPNFTVYETDFGFGRPNKVEMVHPFKCMSLTESGDEEGGLEVGFVCRSTEFEYFVSVIEQELKASKS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00790 485 Gene3D - 24 252 IPR023213 -
Cca10g00790 485 PANTHER - 18 485 - -
Cca10g00790 485 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 18 485 - -
Cca10g00790 485 Gene3D - 264 483 IPR023213 -
Cca10g00790 485 Pfam Transferase family 28 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00790 Cca-Chr10 9165096 9166553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00790 62 472 Monolignol Biosynthesis Gene Families AT5G48930 24.533 3.63e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00790 - - gmx:100813644 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00790 10 9165096 9166553 Cca10g00790 10 9165096 9166553 ECH