Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00788 ATGGCAGTTCTTAGAGAACACAAACTTGTTGAAACATGTCGGGTTGGTCCAGCAGTGACAACAACCACCTCTCTTCCCCTCACATTCCTGGATTTGCCTTTGGCAGCAGGTCCTGTTTATGTGAGACGCCAATTCTTCTATCACTTCCCTCATTCCACTCTCCATTTCTGTGAAACCACACTTCCTTCTCTCAAAACCTCACTCTCTCACACCCTTCAACACTTCTTCCCTCTAGCAGGAAACCTCCTCTGTCCTCCACCACCTCACAAACCCTTCATTCGCTGCACCGATCATGACTCTCTCACCTTAACCATCATCGAGTCCAAAGATGATTTCAACCATACATCTTCCAACCACCCCAAAACTCTCAAAGACTTGGATCACTTGGTTCCAAAGTTAACATACACATACACACATGATGACACGTTCACTTTCCCTTTGGTGGCCTTGCAAGCCACGGTTTTCCCCAACCATGGCCTTTGCATCGCGATCACGTATTGCCACGTGATGGATGATAGGTGTTGCAGCCATTTCATGAAGTCTTGGTCTTCCATTTGTCGAAGCCGTGGCGTTGACTTGACCCTTGTGGAGAAGTTTCCACCTTGCTTTGATAGGGAAGTGTTGAAGGACCCCAAGGGACTCGAGGCCATTTTCTTGAGAGACTATTTTGAAGACAGGTCAACATGGAAGGACAAACTCGTTGGTAAGAAAACCACTACTTCTGAGATTTCCACTGGAAATAACGAAGATTATGCCAAAGCAACGATTGTTTTCGGAAGAGATGACATTGAGGGGCTGAAAAGATGGGTGCTGAATGAGTGGAATAAAAGTGAGGAACTCAAAGCGCCACAATATGTATCGACATTTGTGGTGACGTGCGCTTTTGTGTGGTCTTGTTTGGTTAAAACAAGATGCAGAAATGATGATGGAGATAATGAGAAAGAGGAGTATTTTCGTTTTGCTGCAGATTGTAGAGATCGCCTTGAATATCCTGTGCCAGAAACATACTTTGGAAATTGCTTAACTTTTTGTTATTCAATGCTCAAAAGAGAGGACCTCAAGGGAGAGGGCGATTTTGTGAATGCGGTTAAGGTCATTGCAAGGGCAGTGACTGATATGAAAAGTAAACTCTTTAAAGATGCAGAAAATTGGAGGGAATCTTTCATGAAAATGTTTGTGTTGGGAAGTACGTTGGTGGTTACAGGGTCACCCAAATTCACTGTTTATGAGACTGATTTTGGGTTTGGAAGACCTAAAAAAGTGGAAATGATACATTCCTTTAAGGGTATGTCTCTAGCTGAAAGTGGAGACAGGGAAGGAGGACTTGAAGTTGGTTTGGTTTGCAGAACTGAAGAATTTGAATATTTATTTTCTGTCATTCAACAAGGACTTCATGTTTCAAAATCCTAA 1410 0.4319 MAVLREHKLVETCRVGPAVTTTTSLPLTFLDLPLAAGPVYVRRQFFYHFPHSTLHFCETTLPSLKTSLSHTLQHFFPLAGNLLCPPPPHKPFIRCTDHDSLTLTIIESKDDFNHTSSNHPKTLKDLDHLVPKLTYTYTHDDTFTFPLVALQATVFPNHGLCIAITYCHVMDDRCCSHFMKSWSSICRSRGVDLTLVEKFPPCFDREVLKDPKGLEAIFLRDYFEDRSTWKDKLVGKKTTTSEISTGNNEDYAKATIVFGRDDIEGLKRWVLNEWNKSEELKAPQYVSTFVVTCAFVWSCLVKTRCRNDDGDNEKEEYFRFAADCRDRLEYPVPETYFGNCLTFCYSMLKREDLKGEGDFVNAVKVIARAVTDMKSKLFKDAENWRESFMKMFVLGSTLVVTGSPKFTVYETDFGFGRPKKVEMIHSFKGMSLAESGDREGGLEVGLVCRTEEFEYLFSVIQQGLHVSKS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00788 469 PANTHER - 1 469 - -
Cca10g00788 469 Pfam Transferase family 20 447 - -
Cca10g00788 469 Gene3D - 248 467 IPR023213 -
Cca10g00788 469 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 469 - -
Cca10g00788 469 Gene3D - 7 233 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00788 Cca-Chr10 9145399 9147058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00788 46 459 Monolignol Biosynthesis Gene Families AT5G48930 23.502 1.18e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00788 - - gmx:100813644 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00788 10 9145399 9147058 Cca10g00788 10 9145399 9147058 ECH