Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00783 ATGGGAAGAGCACCTTGCTGCGACAAGACTAATAGTCTCAAGAAAGGTCCATGGACACCCCAGGAGGATCTCTTGCTCACCAACTACATTCAGACTCATGGACCAGGAAATTGGAGAACCCTCCCCAAGAATGCTGGTCTACAAAGATGTGGCAAGAGTTGCCGTCTTCGATGGACTAATTACCTTAGACCCGATATCAAGAGAGGGAGATTCTCATTTGAAGAAGAAGAGACAATCATTCAGCTCCACAGTGTCTTGGGAAACAAGTGGTCGGCTATAGCAGCTAGGTTGCCAGGGAGAACCGACAACGAAATAAAGAACTATTGGAACACCCACATTCGGAAGAGATTGCTTAGAATGGGAATTGACCCTGTTACTCACACTCCACGCCTTGATCTTCTTGACATGTCATCGATTCTCAGGTCAGCAATTGGAAACGTTAACCCATCGTTTCTGAATTTGCAAGGGTTATTGGGTGCCCAAGCGTTGATGAACGTCAACCCAGAGTTTTTAAAGCTTGCTGCCACTGCCACTTTGTTATCTTTGAAGAATGAAAACCCATCAAACTTTGTTACACAACAATTAAATTCTGGGAATTGCCAAGTACAAAGCCAAGTTGCTCCTAGTGATCAGTTTCATACACCAACTCAAAGCAACAACGTTAACGTGAATGGTTTATCAAGTTCCCCAGAGAATTCAACTCCTTCTAATTATCTTGGGGAGAATAATTACCTGATTGCTCAACAAAACCAAGTTGATAATTTGCTACATGATCCGGAATTGATGCATTATTTAAACAATGCAAACCAAAACATGGGCTATGAATCGGTTCTTTCTACGCCTTTATCGACTCCAACCCCATTGAATTCATCGTCAACGTATGTGAATAGCAGCACAGAGGAAGAGAGGGACACCTATTGCAGCGATGTGTTCAAGTTAGAAATTCCAGAGAGTCTGGACATTAGTGATTACTTGTAA 978 0.4274 MGRAPCCDKTNSLKKGPWTPQEDLLLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDMSSILRSAIGNVNPSFLNLQGLLGAQALMNVNPEFLKLAATATLLSLKNENPSNFVTQQLNSGNCQVQSQVAPSDQFHTPTQSNNVNVNGLSSSPENSTPSNYLGENNYLIAQQNQVDNLLHDPELMHYLNNANQNMGYESVLSTPLSTPTPLNSSSTYVNSSTEEERDTYCSDVFKLEIPESLDISDYL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00783 325 MobiDBLite consensus disorder prediction 210 239 - -
Cca10g00783 325 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Cca10g00783 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca10g00783 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca10g00783 325 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Cca10g00783 325 MobiDBLite consensus disorder prediction 278 301 - -
Cca10g00783 325 Gene3D - 70 117 - -
Cca10g00783 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Cca10g00783 325 SMART sant 67 115 IPR001005 -
Cca10g00783 325 SMART sant 14 64 IPR001005 -
Cca10g00783 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Cca10g00783 325 PANTHER TRANSCRIPTION FACTOR MYB41 1 320 - -
Cca10g00783 325 CDD SANT 70 113 IPR001005 -
Cca10g00783 325 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Cca10g00783 325 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Cca10g00783 325 Gene3D - 14 67 - -
Cca10g00783 325 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00783 Cca-Chr10 9086173 9087723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00783 1 325 MYB Transcription Factor Family AT4G21440 47.324 3.45e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00783 Myb_DNA-binding 6.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00783 K09422 - gmx:100812189 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00783 10 9086173 9087723 Cca10g00783 10 9086173 9087723 ECH
Cca10g00783 10 9086173 9087723 Cca04g01076 04 12031791 12033059 PCT