Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00779 ATGGATTTTGACCTCGAAAACCCTCTTGGAAACTTCCACGACCTTCCCTGCGACGCTGTCCCTTCCCTCTTCCTCCTCGAATCCGACCACATCCCACCACCCAATTACTGTCACAGTCTCAAAGCCAGCGACTTCGACATCTCCGTTAGAAGAGACGTCGTCTCTTTCATCTCACAGTTGTCCTGCACCTTCGATCCGGTTCTACCTTACTTAGCTATCAACTACTTGGATCGCTTCCTCGCTAACCAAGGAATATTGCAATCAAAGCCATGGGCAAACAAGCTTCTTGCAATCTCTTGCTTTTCTCTAGCTGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCAGGTTCTTCTGAATCATGGTGATGGCGGTGCCATTTTTGAGGCACAAACAATACAAAGAATGGAAGGTATTGTCTTGGGGGCTCTCCAGTGGCGAATGCGTTCGATCACACCCTTCTCTTTCATTCCCTTCTTCATCAATTTGTTCAGGCTCAGAGACCCTGCATTGAGGCAGGTTCTGAAGGATCGAGCTTCTGAAATTATACTAAAGTCACAAAGAGAGATAAAGGTCTTGGAATTCAAGCCATCAACAGTTGCTGCGTCAGCCCTTCTGTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCGTGTTTCTTAAGAGCAATATCCGATTGTTCATTTGTTAATAAAGAAACTGTGGTGCATTGTTATAATGTGATACAAGACATAACCAGAGAGGAGTACGAATCTGAATCTGCGTTGAATATAATTTCAACTTCAGACACACCAGTTAATGTTTTAGACGAACATTTTGTGAGCTTGGAAAGTGAGAAAACCAACATTATGATACAAGAGCAGGACTTCAAGAGAAGGAAAATCACCACCGATTATGGTAACAAACGCACGGTCCCGTTTTCTCATTTTCATCAATGCTGA 948 0.4367 MDFDLENPLGNFHDLPCDAVPSLFLLESDHIPPPNYCHSLKASDFDISVRRDVVSFISQLSCTFDPVLPYLAINYLDRFLANQGILQSKPWANKLLAISCFSLAAKMLKTEYSATDVQVLLNHGDGGAIFEAQTIQRMEGIVLGALQWRMRSITPFSFIPFFINLFRLRDPALRQVLKDRASEIILKSQREIKVLEFKPSTVAASALLYASHELFPFQYPCFLRAISDCSFVNKETVVHCYNVIQDITREEYESESALNIISTSDTPVNVLDEHFVSLESEKTNIMIQEQDFKRRKITTDYGNKRTVPFSHFHQC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00779 315 SMART Cyclin_C_2 153 282 IPR004367 -
Cca10g00779 315 Pfam Cyclin, C-terminal domain 153 253 IPR004367 -
Cca10g00779 315 Pfam Cyclin, N-terminal domain 27 150 IPR006671 -
Cca10g00779 315 SUPERFAMILY Cyclin-like 135 249 IPR036915 -
Cca10g00779 315 CDD CYCLIN 50 143 IPR013763 -
Cca10g00779 315 Gene3D - 33 151 - -
Cca10g00779 315 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Cca10g00779 315 PANTHER CYCLINS 5 301 IPR039361 -
Cca10g00779 315 SMART cyclin_7 157 246 IPR013763 -
Cca10g00779 315 SMART cyclin_7 51 144 IPR013763 -
Cca10g00779 315 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 301 - -
Cca10g00779 315 Gene3D - 23 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00779 Cca-Chr10 9038307 9040532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00779 1 299 Core Cell Cycle Gene Families AT4G03270 46.326 2.28e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00779 K18812 - gmx:100799951 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00779 10 9038307 9040532 Cca10g00779 10 9038307 9040532 ECH
Cca10g00779 10 9038307 9040532 Cca04g01073 04 11979417 11981834 PCT