Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00777 ATGGTGAGAACCCCTTCTCGTGACTCAAGTGGACTTAAGAAGGGTACTTGGACTCCAGAAGAGGATAAAAAGTTAGTAGCTTATGTCACTCGCTATGGCTGTTGGAATTGGCGCCAACTCCCACGATATGCAGGTCTTGAAAGGTGTGGAAAGAGTTGCAGGCTGAGGTGGCTAAATTATCTCAGGCCCAACATAAAAAGAGGAAACTATACGGCAGAAGAAGAAGAGGTTATAATTAGACTACATGAAAAGCTGGGTAACAAGTGGTCTGTGATAGCCACTCATTTAGCCGGAAGAACAGATAACGAAATAAAGAACCACTGGCACACGAACCTCAAAAGCGTTTAG 348 0.4425 MVRTPSRDSSGLKKGTWTPEEDKKLVAYVTRYGCWNWRQLPRYAGLERCGKSCRLRWLNYLRPNIKRGNYTAEEEEVIIRLHEKLGNKWSVIATHLAGRTDNEIKNHWHTNLKSV 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00777 115 CDD SANT 69 112 IPR001005 -
Cca10g00777 115 CDD SANT 16 61 IPR001005 -
Cca10g00777 115 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca10g00777 115 Gene3D - 6 66 - -
Cca10g00777 115 SMART sant 66 114 IPR001005 -
Cca10g00777 115 SMART sant 13 63 IPR001005 -
Cca10g00777 115 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 113 - -
Cca10g00777 115 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca10g00777 115 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 113 - -
Cca10g00777 115 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca10g00777 115 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca10g00777 115 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 115 IPR017930 -
Cca10g00777 115 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca10g00777 115 Gene3D - 69 114 - -
Cca10g00777 115 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00777 Cca-Chr10 9021718 9022381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00777 1 113 MYB Transcription Factor Family AT5G65230 66.372 5.71e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00777 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00777 K09422 - fve:101297703 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00777 10 9021718 9022381 Cca04g01071 04 11932365 11933843 PCT
Cca04g01069 04 11832924 11834516 Cca10g00777 10 9021718 9022381 PCT