Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00776 ATGGTGAGAACCCCTTGTTGTGACCAAAATGGACTCAAGAAAGGAGCATGGACGCCAGAGGAAGACAGGAAGTTGATTGCTTATATCACTAAGTATGGCCACTGGAATTGGCGCTTACTCCCCAAGTTTGCAGGTCTTGCCAGGTGTGGGAAAAGTTGCAGACTGAGATGGCTGAACTATCTAAGACCCGATGTCAAGAGAGGGAATTTTAGTCGTGAAGAAGAAGAAACTATTGTCAAACTTCACGAAAAGCTGGGTAATAGATGGTCAGCAATTGCTGCTGAATTGCCCGGAAGGACTGATAATGAGATAAAGAATCATTGGCACACAGCCCTTAAGAAACGTATTGAAAAAAAGTCATCAGAAGCTAAACGTGAAACTGCAAAAGAAAAATTACCCAAGTCAATGGAGACAGTGTTAGAGAACCACAGTGATTCCTATACAACAGATGCTGCTGCTGCTGCAGCCGCAACAAACCGTGAAAATTGGGTTCCAGAAATCGATGATGATTATTTTTTCTCTGTGGACGCTTATACGGAGTCTGCAGTGTGTGCAGATTTCTGGACAGAGCCTTATTTAGTTGACAATTCCTATGTTCCACCTGAGTATGACGTTGAACTTTGGAGCCAAAACGAATTGTATGAGTGTGAGGGTTTATTCAGCTGA 666 0.4309 MVRTPCCDQNGLKKGAWTPEEDRKLIAYITKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGNFSREEEETIVKLHEKLGNRWSAIAAELPGRTDNEIKNHWHTALKKRIEKKSSEAKRETAKEKLPKSMETVLENHSDSYTTDAAAAAAATNRENWVPEIDDDYFFSVDAYTESAVCADFWTEPYLVDNSYVPPEYDVELWSQNELYECEGLFS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00776 221 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca10g00776 221 CDD SANT 69 110 IPR001005 -
Cca10g00776 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca10g00776 221 SMART sant 66 114 IPR001005 -
Cca10g00776 221 SMART sant 13 63 IPR001005 -
Cca10g00776 221 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca10g00776 221 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca10g00776 221 Gene3D - 7 66 - -
Cca10g00776 221 CDD SANT 16 61 IPR001005 -
Cca10g00776 221 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca10g00776 221 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 143 - -
Cca10g00776 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca10g00776 221 Gene3D - 68 139 - -
Cca10g00776 221 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca10g00776 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00776 Cca-Chr10 8958568 8961175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00776 1 197 MYB Transcription Factor Family AT2G31180 51.256 3.40e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00776 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00776 K09422 - gmx:100815765 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00776 10 8958568 8961175 Cca10g00776 10 8958568 8961175 ECH
Cca10g00776 10 8958568 8961175 Cca04g01069 04 11832924 11834516 PCT
Cca04g01067 04 11781322 11791416 Cca10g00776 10 8958568 8961175 PCT