Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00775 ATGGTGAAAAACACTTTCTCTGATAAAACTGGACTTAGGAAAGGAACATGGACACCACAGGAAGACGAGAAATTGATTGCTTATGTTACCAGATATGGCCACTGGAATTGGAACCTTCTCCCCAAGTTTGCAGGTCTGGAGAGGAGTGGAAAAAGTTGCAGGTTAAGGTGGCTGAATTACTTAAAGCCAGACATCAAAAGAGGAAACTACACTAAAGAAGAAGATGAGACTATCATCCAGCTGCTCCAACGTCTCGGTAACAGATGGTCTACAATTGCTGCTCAACTGCCGGGAAGAACAGACAACGAAATAAAAAACTATTGGCACACCAATCTCAAGAAACGATACCAACAGAGCTCGAACATATGTAGCAAAATTCAAGTATCCGAGTCAAAGGATGAAACTCCGGTCGTAAAACCAGATCAAAACAATATTAATAATGTACAAGTTCCTTTCCAAAACTTTCCACCAATTTCTCGATTAACCGATTCATGCATGACGTCATCCTCGAATGAATTCTCCACAACCACACAAAATTTTGATTTTGTGGATGCATACCAAGACTCCATGAGCGAAAACTTCTGGTTGGAAACATATGTGTTTGACACTTCTTGTGATCCTTGTGATATTTTTGTGGGTGAACCCCATTGCTTTAGCCCTGTGCATGATGTACAACTTTGGTGTCACGATAATGAGTTTTGTGACATTGAACAAAAAGTGATGAATAATGTGGATGATGAAGAGACATTGTACAAATGA 759 0.3992 MVKNTFSDKTGLRKGTWTPQEDEKLIAYVTRYGHWNWNLLPKFAGLERSGKSCRLRWLNYLKPDIKRGNYTKEEDETIIQLLQRLGNRWSTIAAQLPGRTDNEIKNYWHTNLKKRYQQSSNICSKIQVSESKDETPVVKPDQNNINNVQVPFQNFPPISRLTDSCMTSSSNEFSTTTQNFDFVDAYQDSMSENFWLETYVFDTSCDPCDIFVGEPHCFSPVHDVQLWCHDNEFCDIEQKVMNNVDDEETLYK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00775 252 CDD SANT 69 112 IPR001005 -
Cca10g00775 252 SMART sant 66 114 IPR001005 -
Cca10g00775 252 SMART sant 13 63 IPR001005 -
Cca10g00775 252 CDD SANT 16 61 IPR001005 -
Cca10g00775 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca10g00775 252 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 221 - -
Cca10g00775 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca10g00775 252 Gene3D - 14 66 - -
Cca10g00775 252 Gene3D - 69 139 - -
Cca10g00775 252 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Cca10g00775 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca10g00775 252 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca10g00775 252 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca10g00775 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca10g00775 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00775 Cca-Chr10 8910620 8918162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00775 1 210 MYB Transcription Factor Family AT1G06180 47.393 2.96e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00775 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00775 K09422 - gmx:100810385 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00775 10 8910620 8918162 Cca10g00775 10 8910620 8918162 ECH
Cca10g00775 10 8910620 8918162 Cca04g01067 04 11781322 11791416 PCT
Cca04g01066 04 11743741 11746063 Cca10g00775 10 8910620 8918162 PCT