Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00773 ATGGAGACTGATATGTACATTGCTGGCCGAGGTGCTACAGTAACATATGAAATTTCCCAACATTCCACCTCAAAGCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACAAGACCATCATAAATGGAATTCCAATGCTTTCTGGAGAGCAAGGTGAACTTATAAGCAATGCCTATGCTGATGCTTGCTTGATTAATCCTTCAATTATTGCCAACTCTAGTCCATTAGTTACCTCACAAGGAAAGACTATTGTGGCAGATGCTTCAAATCCCATGGAGAACAGTGAGCTTCAAGAGCATTTAGTTGGAGGAATGCCAAATACTCCCTCTTCCCTTGCTGCCATTCTTGCCGCTAGAATTGGTCTTGCAGAAAAATTAGAGAACTCAGAAGCCTTGCCTCCCTCACTCTGCTCAACGGGGCCACTGGCACCATTCTTCAACATTTTGCATGGTTCTTCAAACTCTTTGGCTGCATCTTTTGAGGACTGTGGTTACAATGAAGTCCCTAGCAAATGGAATGCTAACAAGTTCCCTAAGGCTCCAGAGATTGATGCAACTGTGTGTCAGCCTTGTTCTTCAATAGTAGGAAACCTGGATCCAGATGAATGGCCATCAGCAAATGTTGCAAACATGTCCAATCATGCTTACCATTCCTCTAACTTTAGTAAGGAACTTTCTCTAAGTCTTGCAACGTCTACAACCGCAGGACAGTGCTTAGAGGTGAGTTGCTCCAATGTGACCCCATGCGTCGATGGAACCATGTTAGGCTTGGAACAAGCCTCATGCAGTAGCAGTAGGGAACTTTCTATGAATATGGGTGGTAATAAATATGTACAGTTTTCACCAGAAGTACTGGAGTCAAGATACCTTGTTGGGATTCAAGAAATACTTGCTCAAATTGCAAGATATTCATTTGAAAATTTAGAACAGTTAAATTATTCAGCTGCTTCTAATAGATCAGGTGGGAACAAGTCAACTTCAGCTTTCTCACTCAAAAGAAGGATACTGATAGATCACAATGCAAATTCTGTGTATGAAGCTCGTGCAGAGTCTCCATTACAAAGTCATGCCACTGAATCAAAGAAAGGCCAATTGCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAGTGTTTGGATGAGATACACACAGTTGTATCTGCATTCCATGCCGCTACAGAGCTGGACCCGCAAATACATTCACATTTTGCTCTTCAGACCATCTCTATCCTTTACAGGGACTTAAGAGAGAGGATTATCAATTATATTCTTGCCATGGGTTCAACTTTCGACAACTCGTGCTCAGAAGAGAATGAATGGTCTGTTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAGAGAAAAGATCAGTTGTGGAGGCCCCAAAGAGGCTTGCCCGAAAGATCTGTCTCAGTTCTACGAGCTTGGATGTTTCAGAATTTCCTTCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAGATGAATAAAAGAAAGGCTTGTCGGAACGAAGAAGGATTGCAGAGCAGCCATGGAAACAGGATAAGCATCAGTAATCAAAGGTTTAGTGTAAACTAA 1692 0.4214 METDMYIAGRGATVTYEISQHSTSKPLIQCYSLDLNNKTIINGIPMLSGEQGELISNAYADACLINPSIIANSSPLVTSQGKTIVADASNPMENSELQEHLVGGMPNTPSSLAAILAARIGLAEKLENSEALPPSLCSTGPLAPFFNILHGSSNSLAASFEDCGYNEVPSKWNANKFPKAPEIDATVCQPCSSIVGNLDPDEWPSANVANMSNHAYHSSNFSKELSLSLATSTTAGQCLEVSCSNVTPCVDGTMLGLEQASCSSSRELSMNMGGNKYVQFSPEVLESRYLVGIQEILAQIARYSFENLEQLNYSAASNRSGGNKSTSAFSLKRRILIDHNANSVYEARAESPLQSHATESKKGQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHSHFALQTISILYRDLRERIINYILAMGSTFDNSCSEENEWSVETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGLQSSHGNRISISNQRFSVN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00773 563 CDD homeodomain 464 525 IPR001356 GO:0003677
Cca10g00773 563 Gene3D - 467 546 - -
Cca10g00773 563 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 560 - -
Cca10g00773 563 SMART prehox3 278 422 IPR006563 -
Cca10g00773 563 Pfam Homeobox KN domain 481 520 IPR008422 GO:0003677|GO:0006355
Cca10g00773 563 ProSiteProfiles 'Homeobox' domain profile. 461 524 IPR001356 GO:0003677
Cca10g00773 563 SUPERFAMILY Homeodomain-like 466 533 IPR009057 -
Cca10g00773 563 SMART HOX_1 464 528 IPR001356 GO:0003677
Cca10g00773 563 PANTHER HOMEOBOX PROTEIN ATH1 13 560 - -
Cca10g00773 563 Pfam Associated with HOX 284 420 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00773 Cca-Chr10 8869334 8871858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00773 224 537 Homeobox Transcription Factor Family AT4G32980 56.467 6.44e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca10g00773 POX 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00773 - - gmx:100820354 917.531