Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00767 ATGAAGAAGTGCGAGCTGTGCAAGGTTCCGGCTAGGACCTTCTGCGAGTCGGACCAGGCGAGCTTATGCTGGGACTGCGACGCCAAGGTACACGGCGCCAACTTCCTCGTCGCCAGACACACGCGCACGCTCCTCTGCCACGCGTGCCAGTCGCTCACGCCGTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTATCGCTCTGCCAGCGCTGCGCCGGCGGAACCACCGAGCAAGCCCAAGAGAGCGAGGGCGCCAATGACGACGATTTAGACACCgaccaagacgacgacgacgaccagaccgaggatgaggacgaggtcaccgccgacgaggacgGAGATAACCAGGTTGTCCCTTGGTcctccgcgccgccgcctccgccgccAGCTCCGAGTTCATCCAGCAGCGACGAGTCGGTTAGCCGGTGCAACAACAACGACGAGGATGTTTCTCAATCAGTTACCACATTGAAACGACGTCGTCAGAATAACGATTTTCAGGATTCGAATTCGAGCAGTCGGGGATACGAAGGGAGCGAAGTGGAGAGGGGAGGTTGGTTGGTTCGGTTGCGGCGGCGAACCGCCGCGGAAGGTGGCGATGTGGCGGTTGAGCGACGGAGTTGTAGAGCGGCGTTTCCGTACGGTTGCTATAATGATAGAGGGTCGGAAGACGTTTGA 681 0.5213 MKKCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHACQSLTPWKASGAALGNTVSLCQRCAGGTTEQAQESEGANDDDLDTDQDDDDDQTEDEDEVTADEDGDNQVVPWSSAPPPPPPAPSSSSSDESVSRCNNNDEDVSQSVTTLKRRRQNNDFQDSNSSSRGYEGSEVERGGWLVRLRRRTAAEGGDVAVERRSCRAAFPYGCYNDRGSEDV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00767 226 PANTHER - 1 226 - -
Cca10g00767 226 MobiDBLite consensus disorder prediction 77 186 - -
Cca10g00767 226 SMART bboxneu5 1 45 IPR000315 GO:0008270
Cca10g00767 226 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Cca10g00767 226 MobiDBLite consensus disorder prediction 83 113 - -
Cca10g00767 226 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Cca10g00767 226 MobiDBLite consensus disorder prediction 135 178 - -
Cca10g00767 226 CDD Bbox1_BBX-like 3 45 - -
Cca10g00767 226 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00767 Cca-Chr10 8790392 8791895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00767 2 129 C2C2-CO-like Transcription Factor Family AT4G27310 45.062 2.39e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca10g00767 zf-B_box 5.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00767 - - gmx:100801024 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00767 10 8790392 8791895 Cca10g00767 10 8790392 8791895 ECH
Cca10g00767 10 8790392 8791895 Cca04g01061 04 11677620 11678800 PCT