Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00766 ATGACAGCAAACAAGTGGTTCAAAAGTCATAGGAACAAGTGCTATCTTGTATTAGACATGAGAAGTGACGAGGTTCTGTTCTTCGTTCTTCTTTTTTGGTCCCAACTATGTTCAGCTAGAGATACATTGAACGCTGGCCAGACAATAACTCAACATTCGGCGGCGTTAAACCTTGTTTCATCCAAACTTACTTTTGAGCTGGGCTTCTTTTCTTTAAGCGTAAAGACATACTTAGGGATATGGTATCATGGGTTGGAACCACTAACAGTGGTTTGGGTTGCCAATAGAGACAACCCTGTTGAAGATTCTAGCGGAGTATTTCGAATTTCCGAGGATGGAAATCTGGTGGTAGAAAGTGCAGCAGGGAGTTATCACTGGTCCTCGCAACTTGAACTATCCTCGTCCACAAACAGAACAGTGGTGCTCCTAGATTCAGGGAACCTCGTACTAATGGACGATGATAGTAACATGTTGTGGCAGAGCTTCCGAAACCCAACAGACACCTTTCTCCCTGGCATGAAAATGGATGCCAATTTAACGTTGAGTTCATGGAGAGACGCCGCTGACCCAGCACGTGGGGACTTCACCTTTAAGCTGGATGGTACTCAAAACATGGTAGTGGAAAAAGAGTCAAAACTTTACTGGGCATTTGATCGACTTGACGTGGACACAGAAGCCATTTCCCTATTAATTTTCAATTTGTTGGAGAAAGCCACCGGGGTTACTATATCCTACAATATCTCAAAGAAAACTGTCTTCGAATCGCCACCTTACAATTACTCCAATTCAAGGCTGTTAATGAATTCTAGCGGGGAGATACAGTTTCTCAAGTGGAACCAGGAAGAGTTGCAATGGGATAAGCGTTGGTCGGGGCCATCTGACAAGTGTGACATACATGACTATTGTGGTAGCTTTGGGATCTGTAACAAAAATAATGAGATTCGCTGCAAATGTTTGCCAGGGTTCAGTCCCAACCATGATCCTCATGACGATGGAGAATTCAAAATCCAAGGGTGCGTCAGAAAATCAACGTCGTGTATCCACAACACGGAGGTCATGTTCTTGAACTTGACCAACATGAAAGTTGCCGAACCAGGCCAAGAATTCTATACAGAAACAGAAGCAGAGTGCCAATCCTTATGCCTTAACACTACTAACAAGTGTCCCAAGTCTCAGTGCCAGGCGTATTCATATAATGAGTCTACGTATGGTGATCGTGGTGACTTTACATGCAAGATCTGGACACGAAATTTATCTACTCTTCTAGAGGACTATGATCACGGTCTCGATCTTTCTATCCTTGTCAAGGCTTCAGATATAGAACCAAGTGCAAAATGGTGTGAACCTTGCGGCACATATGTAATTCCTTACCCGCTAAGCACTGCACCAAACTGCGGTGACCCCATGTACAACAAGTTCAATTGCAGCAAATCCACAGGCCAAGTTAGCTTCTTGATGCCCGGAGGAACATCCCAGCCAGTTACTAGGATCGATGAAGATACCAGAATGTTTTACATTCAAACTGATGCTTCTTATTCCTGTAGTTCCATATATCAAAACGACACACTTAATTTTCCATTTAATGTAGCTGATTGCCTTCAAGATGTTGGAATAGTTAAAATGAGTTGGCTACCAGCACCAGAACCTCCATGTAGTAAGCTTATAGACTGCAATAATTGGCCCCATTCGACATGCAAACCATCAAGTCAAGGAGGAACCAGGTGCCTTTGCGATTCAAACTATAAGTGGAATCACTCATTTATGACTTGCACCCAAGAAGAGCCACCAAGAAACCATTCAACCAAACGAATGCCGTTGATTCTTACATTAACTCTTGGTATGGCTATTGTGTCATGCATAATAGCATTTTCCATTGTGCAGAGAAAGAAAAAAGCCAAGCTTGATCGGGAAAGCACCCGAATTCAGGAGAGCTTAGACGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTGCGTAGTTTAGGAGAAAAAGACATTGAAGGCATTGAAGTACCCTGTTATACTTTTGCAAGCATTCTAGCTGCTACAAATAATTTCTCAGATTCTAATAAGCTTGGAAGAGGAGGTTATGGACCTGTGTATAAGGGAAGGTTTCCTGGTGGTCAAGATATAGCTGTGAAGAGACTTTCAAGTGCTTCAACTCAAGGCTTACGGGAATTCAAGAATGAGGTTATTTTGATCGCCAAACTTCAACATCGAAACCTCGTTAGACTTAGGGGCTATTGCATAGAAGGAGATGAAAAAATCTTACTTTATGAATATATGCCAAACAAGAGCTTGGACTCATTCATATTTGATCGTTCAGGAACTCTACTTCTGGATTGGCCAATGAGATTTGAGATAATTGTAGGCATTGCACGAGGCATGCTCTATCTTCACCAAGACTCTAGATTGAGAGTGATTCATAGAGACCTAAAAACCAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCGGACTTTGGCCTTGCCAAAATATTTGGGGGAAAAGAAACCGGAGCAAGTACTGAGAGAGTGGTGGGAACCTATGGATACATGTCTCCAGAGTATGCCTTGGACGGGCATTTTTCAATCAAATCTGATGTTTTCAGCTTTGGAGTTGTCTTACTTGAGATTCTCAGTGGAGAAAGGAACACGGGATTCTATCGGTGCGAAGAAATTTGTAGCCTTTTGGGTTATGCATGGAAGTTATGGACAGAGAACAAGTTAGTGAATTTAATGGACCCATGTCTTGGTGGAACATGCAATGAAAATCAATTCATTAAGTGTGCACTTATTGGGCTCTTATGCATACAAGATGAACCAGGTGATCGACCCACTATGTCAAATGTTTTGTCAATGCTTGACATGGAGACAACAACCTTGCCAATTCCCACGCAGCCAACCTTTTTTGTGAACAAGCGTCTTTTTTCTGTCTCAGCTAACGAAATGGAAATAAGTTTGCAATTTGATAGCAGTTATGGAGAAGGCAGATAG 3003 0.4219 MTANKWFKSHRNKCYLVLDMRSDEVLFFVLLFWSQLCSARDTLNAGQTITQHSAALNLVSSKLTFELGFFSLSVKTYLGIWYHGLEPLTVVWVANRDNPVEDSSGVFRISEDGNLVVESAAGSYHWSSQLELSSSTNRTVVLLDSGNLVLMDDDSNMLWQSFRNPTDTFLPGMKMDANLTLSSWRDAADPARGDFTFKLDGTQNMVVEKESKLYWAFDRLDVDTEAISLLIFNLLEKATGVTISYNISKKTVFESPPYNYSNSRLLMNSSGEIQFLKWNQEELQWDKRWSGPSDKCDIHDYCGSFGICNKNNEIRCKCLPGFSPNHDPHDDGEFKIQGCVRKSTSCIHNTEVMFLNLTNMKVAEPGQEFYTETEAECQSLCLNTTNKCPKSQCQAYSYNESTYGDRGDFTCKIWTRNLSTLLEDYDHGLDLSILVKASDIEPSAKWCEPCGTYVIPYPLSTAPNCGDPMYNKFNCSKSTGQVSFLMPGGTSQPVTRIDEDTRMFYIQTDASYSCSSIYQNDTLNFPFNVADCLQDVGIVKMSWLPAPEPPCSKLIDCNNWPHSTCKPSSQGGTRCLCDSNYKWNHSFMTCTQEEPPRNHSTKRMPLILTLTLGMAIVSCIIAFSIVQRKKKAKLDRESTRIQESLDESERHVKGLIGLRSLGEKDIEGIEVPCYTFASILAATNNFSDSNKLGRGGYGPVYKGRFPGGQDIAVKRLSSASTQGLREFKNEVILIAKLQHRNLVRLRGYCIEGDEKILLYEYMPNKSLDSFIFDRSGTLLLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETGASTERVVGTYGYMSPEYALDGHFSIKSDVFSFGVVLLEILSGERNTGFYRCEEICSLLGYAWKLWTENKLVNLMDPCLGGTCNENQFIKCALIGLLCIQDEPGDRPTMSNVLSMLDMETTTLPIPTQPTFFVNKRLFSVSANEMEISLQFDSSYGEGR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00766 1000 ProSiteProfiles Protein kinase domain profile. 686 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00766 1000 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 31 998 - -
Cca10g00766 1000 CDD STKc_IRAK 692 958 - -
Cca10g00766 1000 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 31 998 - -
Cca10g00766 1000 SMART ntp_6 349 435 IPR003609 -
Cca10g00766 1000 CDD B_lectin 42 165 IPR001480 -
Cca10g00766 1000 Pfam D-mannose binding lectin 89 180 IPR001480 -
Cca10g00766 1000 Gene3D Phosphorylase Kinase; domain 1 660 761 - -
Cca10g00766 1000 ProSiteProfiles PAN/Apple domain profile. 346 438 IPR003609 -
Cca10g00766 1000 Pfam Protein tyrosine and serine/threonine kinase 689 956 IPR001245 GO:0004672|GO:0006468
Cca10g00766 1000 Pfam S-locus glycoprotein domain 258 325 IPR000858 GO:0048544
Cca10g00766 1000 SMART serkin_6 686 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00766 1000 Gene3D - 34 163 IPR036426 -
Cca10g00766 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Cca10g00766 1000 ProSiteProfiles Bulb-type lectin domain profile. 40 163 IPR001480 -
Cca10g00766 1000 SUPERFAMILY Protein kinase-like (PK-like) 671 983 IPR011009 -
Cca10g00766 1000 Gene3D Transferase(Phosphotransferase) domain 1 762 964 - -
Cca10g00766 1000 SMART blect_4 40 165 IPR001480 -
Cca10g00766 1000 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 185 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00766 Cca-Chr10 8773313 8777067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00766 661 974 Receptor kinase-like Gene Family AT4G05200 55.414 5.63e-121 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g00766 PK_Tyr_Ser-Thr 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00766 - - gmx:100807185 1439.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00766 10 8773313 8777067 Cca10g00766 10 8773313 8777067 ECH