Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00760 ATGGCAGAGTTCATCTCTGTTTTCTTCGTCATCTTCCCCAACCAGAGATGCGCCCCACAACACCTACATACTAAAGCTTTCATCTTTTCGACACCCCCTCAGTGCAACTTGAATTGCATGCACATGTTAGCAAAAGCCCACAATAAAGGGGATGGATCTAAGTCCCTGGCTAAGATACTGGCAAGATGGAAGGAGTATAATGCCCAGCTTGATTCCTGCAATGATGCTGATAAGCCGGTTCGCAAAGTCCCTGCCAAGGGTTCAAAGAAGGGGTGTATGAAAGGTAAAGGGGGCCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCGAATAGAGGGAATAGGCTCTGGCTAGGGACTTTTTCCACTGCCATTGGAGCTGCGCTTGCGTATGATGAAGCAGCGAGGGCAATGTATGGTTCCTGTGCCCGCCTAAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCAGAGGAATCTTCCAAAGATTCTCCAGTTGCGAATCGTTCTGGTTCCTCAATGGCAGTGTCTGCAAATACTGGGTCCATGATTTCACCAAGTAACTCTGGGGGAGGTATCGAAGAGGATATTGATCTGGAGCCCATTTCCTTATCCCTAAGTGTAAAGCATGAGAATGGGGAAGGCGACAGTTTCTATATTAGATGTGGAAGTGTCAATTTGGATGAATATAAAGACATGAGATTTTGGAAAATCAACATTTTCTAA 765 0.4627 MAEFISVFFVIFPNQRCAPQHLHTKAFIFSTPPQCNLNCMHMLAKAHNKGDGSKSLAKILARWKEYNAQLDSCNDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFSTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPVANRSGSSMAVSANTGSMISPSNSGGGIEEDIDLEPISLSLSVKHENGEGDSFYIRCGSVNLDEYKDMRFWKINIF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00760 254 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 45 201 - -
Cca10g00760 254 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Cca10g00760 254 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Cca10g00760 254 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Cca10g00760 254 MobiDBLite consensus disorder prediction 171 204 - -
Cca10g00760 254 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Cca10g00760 254 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 45 201 - -
Cca10g00760 254 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Cca10g00760 254 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Cca10g00760 254 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Cca10g00760 254 MobiDBLite consensus disorder prediction 171 202 - -
Cca10g00760 254 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00760 Cca-Chr10 8676344 8683627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00760 49 201 AP2-EREBP Transcription Factor Family AT2G40340 54.140 9.37e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g00760 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00760 - - gmx:100527471 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00760 10 8676344 8683627 Cca04g01055 04 11591826 11592452 PCT