Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00754 ATGCACGTCACGTCCTCACACAGCCACATGAAGGCTGAGCTGAAAGGCACGTCCATTTCCTTTCAAAACCCTACTCTCTTCAACACACCCCACAACCCTCTCTCGGGGGCACTCAAAGGGTGTCTTGGGAGCCTCGATGGAGCTTGTATTGAGAAGCTCTTGCTTCACTGCGCCAGTGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGCGGGGGACACTAACCAAAGACTCACCTCGTGGTTTCTGAGGGCACTGATCTCTAGGGCTTCGAGAATTTGCCCTGCTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGTTGATGACGGTGACCGAGCTTGCCGGGTATGTGGATCTAATTCCTTGGCATAGGTTTGGGTATTGTGCTTCCAACAATGAAATTTATAAAGCAATAACGGGGTTCCAAAGGGTGCATATTCTAGATTTTAGCATAACGCATTGCATGCAGTGGCCTACTTTCATAGATGCGTTAGCAAAAAGGCCTGAAGGACCCCCTTCACTTAGAATCACGGTACCATCTTGTAGACCACATGTACCCCCTTTGGTGAACATATCAATACACGAGGTTGGGTTACGTTTAGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAATGTTGTAGGGAACACAGGACCATTAATACCCGCTGAATTGAGTGATGAATCAACTAGCTTTCATTTTGAATCAATGTTGAGTCTCTTGAATCCTACTATGCTAAACCTCAGGGAAGATGAAGCTTTGGTCATAAATTGTCAAAATTGGCTACGCTATTTGTCTGATGATAGAAAGGGAAGCCGCCAAAGTCTTTCCCTTAGAGATGCTTTTCTGCATCTGATTAAAGGTCTTAATCCCCGGATTGTGCTATTAGTTGATGAGGATTGTGATCTTAGTGCATTCAGTCTCGCATCAAGAATTACCACATGTTTCAATCATCTATGGATACCCTTTGACGCATTGGAGACTTTTTTGCCTAAAGATAATTGTCAGAGGACAGAGTTTGAATCCGACATAGGGCAGAAAATTGAGAACATCATAAGCTTTGAAGGGCATCAGAGAATTGAGAGGTTGGAGTCCGGGGTGCAAATGTCTCAAAGAATGAAAAATGCTGGGTATCTAAGTGTTCCATTCTGTGATGAAACTGTTAGAGAAGTTAAGGGTTTGCTAGATGAGCATGCTAGTGGATGGGGGATGAAAAGAGAAGAAGGTATGTTAGTTCTCACATGGAAAGGAAACAGCTGTGTGTTTGCGACAGCTTGGGTCCCTTATGAAATGAGGGATGATCTTGGTATGGATGCATGCATGTCTTGA 1380 0.4471 MHVTSSHSHMKAELKGTSISFQNPTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPAGDTNQRLTSWFLRALISRASRICPAAMSFKGSNTIQRRLMTVTELAGYVDLIPWHRFGYCASNNEIYKAITGFQRVHILDFSITHCMQWPTFIDALAKRPEGPPSLRITVPSCRPHVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVVGNTGPLIPAELSDESTSFHFESMLSLLNPTMLNLREDEALVINCQNWLRYLSDDRKGSRQSLSLRDAFLHLIKGLNPRIVLLVDEDCDLSAFSLASRITTCFNHLWIPFDALETFLPKDNCQRTEFESDIGQKIENIISFEGHQRIERLESGVQMSQRMKNAGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPYEMRDDLGMDACMS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00754 459 PANTHER OS05G0500600 PROTEIN 11 445 - -
Cca10g00754 459 Pfam GRAS domain family 51 443 IPR005202 -
Cca10g00754 459 ProSiteProfiles GRAS family profile. 41 444 IPR005202 -
Cca10g00754 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 445 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00754 Cca-Chr10 8532017 8533880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00754 17 445 GRAS Transcription Factor Family AT3G49950 45.205 2.24e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca10g00754 GRAS 9e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00754 - - gmx:100805056 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00754 10 8532017 8533880 Cca10g00754 10 8532017 8533880 ECH