Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00753 ATGGGCGATGGAGGCGTCGCATGCATGCCTTTGCAGTATATTATGGATAGGTTGCCGAGTGCCGAGAAGACTGTTGTTTGCGGAGGCAAGAGTGGGAACAATGGTTTCAATTCAAAGTTGCTCAAGTTTGTTGACGGTGAGAGGAGGAAGATGAAAGCCAGGAAGAGCGAATTGGGGTTGGACAGAGTGAGCAAGAGGAGCAGCAACGAAGTTGAGAATGGTGAAGTTTGCGGTGGTACTGGGGAGAAGGTGCAGAAAGAGGAAGTGGAGGAGGGTGAATTGGGTACTTTGAAGTGGCCCAGAACTGACCTGGAGAATGGGGAGTTCGTGCCGGAGATGATGATGCCGCTGCCGAGGAGAGGCGAGATTGAAAACGGAGAGATTGTGAGTGGGAAGTGGAAGGCAAGGGAGCTGGAGAAGGGAGAGATTGCTTCTGGCAAGTGGAGGAAGGAAGATGTGGAAAGAGGGGAGATAATTCCTGAGAAGGGTGGTAGGAAAGGAGAAGCCGAGAGAGGGGAGTATGGGTCGTGGAGAGGAATTAAGGATGAAATTGAGAAGGGAGAGTTCATTCCAGATAGATGGTACAAGGGCGATTACGATAACAGCAGAATCCGCAGGTACCATTCAAGCAGGGACAAAGGGTGGAAAACTGAACGTGAAAGTACACCTTCTTCTGGCAGATATACAGGCGATGACTTTTTTAGAAAGAAGGAATTGAATAGAAGTGGGGGTCAGCATGTTAAAAGTTCTCCCAGGTGGGATGGGCAACAGCGGAACGTAAGGATCAGTTCAAAGATTGTGGATGATGAGAAGAATGTACACAGTAATGGTAAGGATCATACACGGGATTACTCTTCTGGAAGTCGCTTGAAGAGGCTTGGCAATGATACTGACAGCTGTGAGCGGAAGCATTCTTCAGATTATGCTGGTTTGAAAAGCCGGAGGCTTTCTGATGATAGTTGTCGCCATGCTTATTCCGAGAACTATTCACGTCGCTCTGTAGAGCGGTCTTACAGAAATAATAATGCTTCAAAATTACCAGCAGACAAGTATTCTAGTAGGAATCATGAATCTTCTTTGTCCACCAGAGCAGCTTATGACAAGCATGGGCGCAGCCCTGGTCATTCTGAGCGGTCCCCCCGAGACCGAGGGAAGTATTATGATCATAGAGAACGCACTCCAGTGCGGCGGTCTCCCTGTGGTCGTGACAGATCACCGTATAACAGGGAGAAATCTCCCCATGGTCGTGAGAGGTCTCCATATATGAGGAACTGGGATAGAACTCGTCAGCATGATCATAAATTGAGGAGTCCAATGCGTGCTGAGCAGTCGCCACCAGAGCGCAGTCGGCGGCATGAGCTGTCACCCCCAGATCGAAGCCGGCGGCATGAGCCGTCTCCGCCAGATCGAAGTCGGCGTCATGATCGTAGGGACTGTACCCCAAATTTAGTGGAAGCATCTCCCCTTGACCGAACAAGGAAAGATAGACGCCAGGAATCAAGTTGTAAAACCTTATCAATTGAAAAACACAACTCCCAAAATAGTTGTAAGGATCATGAAGATAAGCAGATTCAAAGGGAGTCAAATTGTTCAAGTACAGAATCTCAAAGTGATAAAAATGTGCAAGATACCATTAAGTCTGTTGAGAAAGACATCTGCAGTCAACCTATAAAGGAACAGCATAATTGCAGCCCAACTGTTAGCCACAAAGAATCTCCTCACTCCGAGCCACCTCCTGAGGAACTGCCTTCAATGGAGGAAGATATGGACATTTGTGATACCCCTCCCCATGTGCCTGTGGTGACAGATTTGTCATCAGGGAAATGGTATTACCTCGACTATGGTGGTGTAGAAAACGGGCCTGCTAAATTGTGTGACATCAAGGTCCTTGTTGATGAAGGTGTTCTAATGCCCGATCACTTTATCAAGCACTTGGATAGTGACAGGTGGTTAACAGTTGAAAATGCCGTGTCACCTTTGGCACCTCAGATATTTCCATCAATTGCGTCTGATACCATAACCCAACTGGTAAATCCTCCTGAAGCTCCTGGTAATATTTTGTCAGATACAACAGATATTCTTCAATCTGCTCCTGAGAATCTTCAGGAAATGCTACCCCCCTTGCCACAGCCACCAGTATGCCCTAATGACAGTGTGTTTACACCTGAACTTTTTGAGGACCTCCGCATTGATGAAAGAGTTAGAAATCTGTTAGAGGGTTATGATGTCACTCCTGGGATGGAACTTGAGGCAATAAAAGAAGCATTGCAAATGAATTTTGAAAATGCAAAAGGGGAGGGACTGGGAGACTATGAAGGTTTTCCTTGGAGTGTTTCCTGCCTTAAGGAAGATTGTGATTCAAGTACTGATTTAGCGTCAAGAGATTCTGAATCTCAGTTAAGTATGTCCTGTGATATGGATAATGGACTTGCCTTTGGTGTTTCTAGTGACTGGTTTTCCACCCATTGGTCATGTAAAGGTGGTGACTGGAAAAGGAATGATGATGCCCAAGATAGATATTGTAGGAAGAAACTTGTCCTGAATAATGGTTTTCAGTTATGTCAAATGCCAAAGTCTGGTTGTGAAGATCCTCGTTGGCCTCAAAAAGATGACTTGTATTTTCCTTCCCAAAGCAGGAGGCTTGATCTCCCTCTATGGGCTTTCTGTGCTGATGAGCGGGATGATTGCAGTGTTGCGAGCAGATCAGTCCAAAGTAAGCCTGCTTCTGTGAGAGGAGTGAAAGGCAATGTTCTTTCTGTGGTCAGGATAAATGCATGTGTTGTTAAAGACCAGGGATCATTGGTCTCTGAGTCACGCCACAAGACCCGGGGTAAGGAAAGACATCATTCAAGGTCATCTCGGCCCTTCTCTTCAACCAGTGATAGTAGGAGATCATCAACTGAACAAGATTCTCAGTCAAAAGCTGTTAGTGATCAAGGTTCTTACCGGATCATGGAATTCATTAATGTCCCTAAAGATCATCTCTGTTCTATCCATGAGTTACAATTACATTTGGGTGACTGGTATTATCTTGATGGTTCTGGGCGTGAAAGGGGCCCCTCATCATTTTCGGAGCTACAGTATTTAGTAGATCAAGGAATCATAAAAAAGCATTGCAGTGTGTTTAGGAAAAGAGATAAACTCTGGGTTCCTATTACCTCTGCAACAGAAACTTCTGATGGAAGTCTCACGAGCCAGCAAGAAAGCAGTTCAATCTCTGGTGCATGTTCTGGTCTTCCATCAAAGCAAACTCAGGGTGTTTCATCTGGTGACCCTTACACTAATTCAAGTTTGTTTAACAGCTTACATCCTCAGTTTGTTGGTTATACTCGTGGGAAGCTACATGAACTGGTAATGAAATCATATAAAAGCCGGGAGTTTGCTGCAGCTATAAATGAGGTTTTGGATCCCTGGATCAATGCAAGACAACCAAAGAAAGAAATCGAAAAACAAATATATTGGAAATCAGAAGGTGATGTACATGCTTCCAAAAGGGCCCGAATGCTGGTTGATGATAGTGAAGACAACAGTGATTTTGAAGATGGTGATGTTACTGTCGAGAAGGATGAATCCACTTTTGAGGATCTATGTGGTGATGCTACTTTCCCTGAAGAAGAAATTGGTATTACTGATAATGATGTGGGAAGCTGGGGCCTTTTGGATGGTTGTGTGTTAGCACGGGTTTTCCATTTTTTGAGATCTGATTTGAAGTCCCTTGGTTTTGCTGCAATGACTTGCAAGCGCTGGAGAGCTGCTGTAGGGTTTTATAAAGAAGTGTCAATACAGGTCAATTTGTCATCCTTAGGTCATTCCTGCACCGATACCATGTTGTGGAACATTTTGAATGCTTATGATAATGACAAGATCAATTCTATTATTCTAAGGGGTTGTGTCAATATTACGGCTGAAATGCTTGAGAAAATTATTCTTTCATTTCCTGGTTTATTTACAATAGACATTAGAGGCTGCAACCAGTTTGGAGATCTGACTCTTAAATTTTCCAATGTGAAATGGATCAAGAGCCGAAGTTCACACTTGACTAAACTTGCAGAGGAGCCTTATAAAATTAGAAGTCTTAAACATATTACAGAGCAAACCTTGTATGTTTCCAAATCCAGCAGTTTAGGTTTAGATGATTTTGGTCAATTGAAGGATTACTTTGATAGTGTGGATAAGAGAGATACCAAGCAATTATTCCGTCAAAACTTGTACAAGCGGTCAAAACTATATGATGCTAGAAAGTCCTCCTCCATTCTCTCTAGGGATGCTCGGACAAGACGTTGGGCAATCAAGAAATCTGAAAGCGGTTATAAGAGGATGGAAGAATTCCTTGCTTCAAGGCTTAGGGAAATTATGAAGACAAACACTTGTGACTTTTTTGTGCCCAAGGTTGCAGAAATTGAGGTTAAAATGAAAAGTGGTTATTACAGTAACCGTGGGTTGAATTCTGTGAAAGAGGACATAAGTAGAATGTGCCGTGATGCAATAAAAGTGAAGAATCGGGGTGATGCCAGCGACATGAATCATATCATCACATTGTTTATTCAGCTTGCAACACGGCTGGAAGAGAGTTCTAAATCTGTGCATGACAGAAATGCGTTACTGAAATCATGGGACAATGACTTGCCTGCTGTATCATGCTCTACTTTGTCAAAGTATAAGAAGCATAGATTGGTGAATGAAAGGAAGTATAGGAGTAATGGAACACATGGTTTGGATAATGTGGAATATACCTCTGATCGAGAAATTAGGAGGCGCTTATCAAGGTTGAACAAGAAATCTATGGACTCAGAGAGTGAAACATCTGATGATGATCTGGACAAGTCTTGTGAAGATGGCAAGAGTGACAGTGATACTACAACCTCCGACAGTGGAAGTGATCGAGAAGTACATTCAGAAAGTCTAATTAGGGAGTCAAGAGGGGATGGATACTTTACGTCTGAGGAAGAGTTGGGTTTTATAACTGATGATCGAGAGTGGGGTGCTCGCATGACAAAAGCAAGTCTGGTTCCTCCGGTTACCAGGAAGTATAAAGTCATTGATCAGTATTGCATTGTAGCTGATGAGGAGGATGTACAAAGAAAGATGAGGGTTTCATTACCAGATGACTATGCTGAGAAGCTGAACGCACAAAAGAATGGCACTGAGGAGTCAGATATGGAACTTCCTGAAGTAAAAGATTACAAACCTAGAAAGCAGCTAGGAAACGAGGTTATTGAGCAAGAAGTTTATGGAATTGATCCTTATACGCACAATCTTTTACTTGATTCTATGCCAGAGGAGTTAGATTGGTCTCTGCAGGATAAGCATGTCTTTATAGAAGACATACTTCTTCGAACATTGAATATGCAAGTTAGGAATTTTACTGGAACTGGAAGCACTCCAATGAGCTACCCATTGCGATCTGTTATTGAAGATATTAAAAGACTTGCTGAGGAGAATTGTGATGTGAGAATGGTTAAAATGTGTCAAGGTATTCTAAAGGCCATGGACAGTCGTCCAGATGACAAATATGTAGCGTATAGGAAGGGACTTGGTGTTGTTTGCAACAAGGAAGAAGGCTTTGCCGAAGATGATTTTGTTGTGGAGTTTCTGGGAGAGGTTTATCCTGTTTGGAAGTGGTTTGAGAAACAAGATGGGATTCGATCTCTGCAGAAAGATAGTAAAGATCCAGCGCCAGAGTTCTATAACATCTACCTTGAGAGGCCAAAGGGTGATGCTTACGGGTATGATTTAGTTGTTGTTGATGCCATGCACATGGCTAATTATGCCAGTCGAATATGTCATTCTTGCCGACCCAATTGTGAAGCCAAGGTTACTGCTGTTGATGGTCAATATCAAATTGGTATTTATAGTGTTCGTAAAATTCAGCATGGTGAGGAGATCACTTTCGACTACAACTCTGTAACAGAGAGCAAGGAGGAGTATGAAGCATCAGTTTGTTTGTGTGGAAGCCAAGTATGCCGTGGGAGCTATTTGAATCTGACTGGTGAAGGGGCTTTCCAAAAGGTTCTGAAGGACTCTCATGGAATTCTTGATCGGCATTATTTGATGCTAGAAGCTTGTGAATTAAATTCCGTGTCTGAAGAGGACTATTATGACCTGGGAAGAGCTGGTTTAGGCAGTTGTTTGCTTGGAGGCCTGCCAGATTGGCTTGTTGCTTATGCGGCTCGCCTTGTGAGATTCATCAATTTTGAAAGAACAAAACTTCCTGAAGAAATTCTAAAGCATAATCTGGAAGAAAAAAGAAAATATTTTTCAGATATATGTCTTGAAGTTGAAAGGAGTGATGCTGAGGTTCAGGCTGAGGGTGTATACAACCAAAGGCTTCAGAATCTTGCTGTCACTCTTGATAAGGTAAGGTATGTTATGAGATGTATTTTTGGTGATCCCCGGAAAGCACCACCTCCTCTTGAGAAGCTCAGTCCTGAAGCAACTGTTTCCTTCCTCTGGAAAGGAGAGGGTTCATTTGTTGAAGAGCTTCTTCAGTGCATAGCTCCTCATGTTGAAGAAGACGTCTTGAATGATCTCAAGTTTAAAATTCATGCTCATGATCCTTCAAATTCTGGAGATATTCAAAAAGAGCTTCGGAAATCTCTGTTATGGTTGAGGGATGAGGTCCGAAATCTTTCTTGTACATATAAATGTCGGCATGATGCTGCTGCTGACTTAATCCATATTTATGCTTATACCAAGTACTTCTTTAGTATACGGAATTATCAAACCATTACGTCACCCCCTGTCTATATTAGTCCACTTGACTTAGGTCCCAAGTACACTAACAAGTTGGGAGCAGAATTTCAAGAGTACCGAAAGATATATGGTGAAAATTATTGTTTAGGGCAGCTGATATTTTGGCATAACCAGAGTAATGCAGATCCAGATCGTAACTTGGCTAGAGCCAGCAGGGGTTGCTTGTCTTTACCAGACATCAGTTCCTTTTATGCCAAGGCTCAGAAGCCATCACGGCATTGTGTTTATGGTCCAAGGACAGTCAGATCTATGCTGGCTAAAATGGAGAAGCAGCCGCAGAGGTCTTGGCCCAAAGATCGGATATGGTCATTCAAAAGTTTTCCTAAATTCTTTGGTAGCCCAATGCTAGATGCTGTAGTAAATAACTCTCCACTGGACAGGGAGATGATTCATTGGTTGAAGCACAGACCTGCCATATTCCAGGCCATGTGGGATCGTTAA 7194 0.4301 MGDGGVACMPLQYIMDRLPSAEKTVVCGGKSGNNGFNSKLLKFVDGERRKMKARKSELGLDRVSKRSSNEVENGEVCGGTGEKVQKEEVEEGELGTLKWPRTDLENGEFVPEMMMPLPRRGEIENGEIVSGKWKARELEKGEIASGKWRKEDVERGEIIPEKGGRKGEAERGEYGSWRGIKDEIEKGEFIPDRWYKGDYDNSRIRRYHSSRDKGWKTERESTPSSGRYTGDDFFRKKELNRSGGQHVKSSPRWDGQQRNVRISSKIVDDEKNVHSNGKDHTRDYSSGSRLKRLGNDTDSCERKHSSDYAGLKSRRLSDDSCRHAYSENYSRRSVERSYRNNNASKLPADKYSSRNHESSLSTRAAYDKHGRSPGHSERSPRDRGKYYDHRERTPVRRSPCGRDRSPYNREKSPHGRERSPYMRNWDRTRQHDHKLRSPMRAEQSPPERSRRHELSPPDRSRRHEPSPPDRSRRHDRRDCTPNLVEASPLDRTRKDRRQESSCKTLSIEKHNSQNSCKDHEDKQIQRESNCSSTESQSDKNVQDTIKSVEKDICSQPIKEQHNCSPTVSHKESPHSEPPPEELPSMEEDMDICDTPPHVPVVTDLSSGKWYYLDYGGVENGPAKLCDIKVLVDEGVLMPDHFIKHLDSDRWLTVENAVSPLAPQIFPSIASDTITQLVNPPEAPGNILSDTTDILQSAPENLQEMLPPLPQPPVCPNDSVFTPELFEDLRIDERVRNLLEGYDVTPGMELEAIKEALQMNFENAKGEGLGDYEGFPWSVSCLKEDCDSSTDLASRDSESQLSMSCDMDNGLAFGVSSDWFSTHWSCKGGDWKRNDDAQDRYCRKKLVLNNGFQLCQMPKSGCEDPRWPQKDDLYFPSQSRRLDLPLWAFCADERDDCSVASRSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRGKERHHSRSSRPFSSTSDSRRSSTEQDSQSKAVSDQGSYRIMEFINVPKDHLCSIHELQLHLGDWYYLDGSGRERGPSSFSELQYLVDQGIIKKHCSVFRKRDKLWVPITSATETSDGSLTSQQESSSISGACSGLPSKQTQGVSSGDPYTNSSLFNSLHPQFVGYTRGKLHELVMKSYKSREFAAAINEVLDPWINARQPKKEIEKQIYWKSEGDVHASKRARMLVDDSEDNSDFEDGDVTVEKDESTFEDLCGDATFPEEEIGITDNDVGSWGLLDGCVLARVFHFLRSDLKSLGFAAMTCKRWRAAVGFYKEVSIQVNLSSLGHSCTDTMLWNILNAYDNDKINSIILRGCVNITAEMLEKIILSFPGLFTIDIRGCNQFGDLTLKFSNVKWIKSRSSHLTKLAEEPYKIRSLKHITEQTLYVSKSSSLGLDDFGQLKDYFDSVDKRDTKQLFRQNLYKRSKLYDARKSSSILSRDARTRRWAIKKSESGYKRMEEFLASRLREIMKTNTCDFFVPKVAEIEVKMKSGYYSNRGLNSVKEDISRMCRDAIKVKNRGDASDMNHIITLFIQLATRLEESSKSVHDRNALLKSWDNDLPAVSCSTLSKYKKHRLVNERKYRSNGTHGLDNVEYTSDREIRRRLSRLNKKSMDSESETSDDDLDKSCEDGKSDSDTTTSDSGSDREVHSESLIRESRGDGYFTSEEELGFITDDREWGARMTKASLVPPVTRKYKVIDQYCIVADEEDVQRKMRVSLPDDYAEKLNAQKNGTEESDMELPEVKDYKPRKQLGNEVIEQEVYGIDPYTHNLLLDSMPEELDWSLQDKHVFIEDILLRTLNMQVRNFTGTGSTPMSYPLRSVIEDIKRLAEENCDVRMVKMCQGILKAMDSRPDDKYVAYRKGLGVVCNKEEGFAEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKDSKDPAPEFYNIYLERPKGDAYGYDLVVVDAMHMANYASRICHSCRPNCEAKVTAVDGQYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDSHGILDRHYLMLEACELNSVSEEDYYDLGRAGLGSCLLGGLPDWLVAYAARLVRFINFERTKLPEEILKHNLEEKRKYFSDICLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPRKAPPPLEKLSPEATVSFLWKGEGSFVEELLQCIAPHVEEDVLNDLKFKIHAHDPSNSGDIQKELRKSLLWLRDEVRNLSCTYKCRHDAAADLIHIYAYTKYFFSIRNYQTITSPPVYISPLDLGPKYTNKLGAEFQEYRKIYGENYCLGQLIFWHNQSNADPDRNLARASRGCLSLPDISSFYAKAQKPSRHCVYGPRTVRSMLAKMEKQPQRSWPKDRIWSFKSFPKFFGSPMLDAVVNNSPLDREMIHWLKHRPAIFQAMWDR 2397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00753 2397 Gene3D SET domain 1814 1998 IPR046341 -
Cca10g00753 2397 ProSiteProfiles SET domain profile. 1824 1967 IPR001214 GO:0005515
Cca10g00753 2397 Pfam SET domain 1913 1967 IPR001214 GO:0005515
Cca10g00753 2397 MobiDBLite consensus disorder prediction 556 584 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 936 977 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 55 69 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 1607 1641 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 335 360 - -
Cca10g00753 2397 SMART set_7 1833 1973 IPR001214 GO:0005515
Cca10g00753 2397 MobiDBLite consensus disorder prediction 528 542 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 361 481 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 1058 1090 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 206 543 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 55 78 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 244 262 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 955 977 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 206 220 - -
Cca10g00753 2397 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 463 2396 - -
Cca10g00753 2397 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 453 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 512 527 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 1588 1641 - -
Cca10g00753 2397 CDD SET_SETD2-like 1841 1989 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 263 334 - -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 557 571 - -
Cca10g00753 2397 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1978 2397 IPR045606 -
Cca10g00753 2397 SUPERFAMILY SET domain 1842 1990 IPR046341 -
Cca10g00753 2397 MobiDBLite consensus disorder prediction 488 504 - -
Cca10g00753 2397 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 1 453 - -
Cca10g00753 2397 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 463 2396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00753 Cca-Chr10 8503836 8518602 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca10g00753 SET 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00753 K22748 - gmx:100776205 4213.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00753 10 8503836 8518602 Cca10g00753 10 8503836 8518602 ECH