Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00752 ATGTTTTCCGGCGAGGAGGAGGCGATGTTGTCGAACGTGAGCCTGCAGTCTCTTCTGTCTCTGAATCTGAACCCTTCCATATTGGGGGAGGGGTTGCCGACGTTGGCGTCTCTAACCGAGGAAGTGGAGTGGCGGGAGCAGAAGCGGCAGCGCGTGGTGATTCCGCAGAGCAACCTGGCGCGGCAGCGGAGGCAGAAGCTGAGCGAGAAGACGCGGTGCCTGCAGAAGCTGATGCCCTGGGACAAGAAAATGGACCAGGCCACGCTCCTAGAAGAGGCCTATAAGTACGTGAAGTTCTTGCAGGCCCAATTACGCGTcctccactccatgccctccacctccgcctccaACAACACGCCCTTCCTTCTCCAAAACGGCGGCGTTTTCCAGAGCCTCAACCGCACCCAGCTCCTTCAGGTTCTCGTCAACTCCCCCGTTGCCCAAACCATGCTCTACTCCCAAGGCTTCTGCGTTTTCTCCCTCGAACAGTTGTCTTTGCTTAGGAAACTCTCCGAAAGGAGGTTGGCACTTGCAGCCTCTGCCTCCAAAACTCTCTTCAACTCACACTCACTTTCTTAG 579 0.532 MFSGEEEAMLSNVSLQSLLSLNLNPSILGEGLPTLASLTEEVEWREQKRQRVVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQLRVLHSMPSTSASNNTPFLLQNGGVFQSLNRTQLLQVLVNSPVAQTMLYSQGFCVFSLEQLSLLRKLSERRLALAASASKTLFNSHSLS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00752 192 PANTHER TRANSCRIPTION FACTOR BHLH117 20 179 - -
Cca10g00752 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 110 IPR036638 GO:0046983
Cca10g00752 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Cca10g00752 192 Gene3D - 47 118 IPR036638 GO:0046983
Cca10g00752 192 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 179 IPR045843 GO:0003700|GO:0006355
Cca10g00752 192 SMART finulus 57 106 IPR011598 GO:0046983
Cca10g00752 192 Pfam Helix-loop-helix DNA-binding domain 61 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00752 Cca-Chr10 8498824 8499505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00752 63 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 48.624 1.02e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00752 HLH 0.00025 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00752 - - ccaj:109817027 319.701