Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00746 ATGGAAATGAATTCCTCTGGTGGTGCCTCCGGTTGGCTTTATGATTATTCCTTTGACATCTCTGTTGCTGGTGCTGACTTCATGGCTGCAGACTCTGCTGGTTTCAGTTGGGGGCCTCAGAGTCAGACCTTCAAGGGTCCTTCAAATATGAGCTTAGAAATGGAATACTCACTGGATTCAACTGTCCTGGAAAATGGTCCTTCTAAACGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCAGGTCGTGAGAAATTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCTGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCGGCTCGAGTGGTAATTCAATTGAGAAATGAAGCCGAGAGGGTGAAGGAAATGAATGATGAATTACAGGCAAAAGTTAAAGAATTGAAGGCCGAAAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGGAAGAGAAAGAAAAATTGGAGCAGCAGGTAAAACTGACAAATGTGCACCCTAGCATCCTCCCTCAAACCGCAACTGCTAAAGGACAAGTTGGTGGCCACAAGCTGATACCTTTCATTGGATACCCTGGATATGCCATGTGGCAGTTTATGCCCCCTGCTGCACTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 696 0.4526 MEMNSSGGASGWLYDYSFDISVAGADFMAADSAGFSWGPQSQTFKGPSNMSLEMEYSLDSTVLENGPSKRLRTESCASGSKAGREKLRRDKLNERFLELSSILEPGRLPKTDKVAILSDAARVVIQLRNEAERVKEMNDELQAKVKELKAEKNELRDEKNRLKEEKEKLEQQVKLTNVHPSILPQTATAKGQVGGHKLIPFIGYPGYAMWQFMPPAALDTSKDHLLRPPVA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00746 231 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Cca10g00746 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 151 IPR036638 GO:0046983
Cca10g00746 231 Gene3D arf6 gtpase in complex with a specific effector, jip4 127 178 - -
Cca10g00746 231 Gene3D - 69 126 IPR036638 GO:0046983
Cca10g00746 231 PANTHER BHLH TRANSCRIPTION FACTOR 1 231 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cca10g00746 231 SMART finulus 82 133 IPR011598 GO:0046983
Cca10g00746 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Cca10g00746 231 CDD bHLH_AtILR3_like 81 156 - -
Cca10g00746 231 Coils Coil 117 179 - -
Cca10g00746 231 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00746 Cca-Chr10 8435293 8437750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00746 34 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.938 1.12e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00746 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00746 - - gmx:100806838 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00746 10 8435293 8437750 Cca10g00746 10 8435293 8437750 ECH