Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00735 ATGGAACCTCTATGTGAGTTTTGTGGGCTTGTGAGAGCTGTGGTTTACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACTCTGCGAATTCTTTGTCTCGCAGGCATTCGCGTTCTCTCCTCTGTGATAAGTGCAATTCGCAGCCAGCGATGATCCGGTGCATGGATCATAAGTTGTCTTCTTGTCAAGGTTGTGACTGGAACCCAAATGATTGTGCTGTTTTGGGACATAGGCGCCTCGCATTGAATTGTTACACTGGTTGTCCCTCTTTGGCTGAGTTTTCTAGGATTTGGTCCATTGTGTTTGATGGCAATGCCGCATTTTGTGGTTGGGAATCACTTCGTAATTTGCCGAAGAGTGAAAGCTGCAATAGCCAGTGTTTGGAGCAACCTGATCATAATGGTGCTTCTGCTTCCTTTGGTTTGGTCAGTGAGAAATTGGATGAAATTGAATCTTGTGTTAGATATGAACCTTGGATGGGGCAATCTCAGATCATTCCCTCAAATCCAAATTACAACACTCCGTACTGCAAAGATCAAGCATTTTTCTTTCCTCAAGACTCAAACCAACCAAAGGAATGTCCTAATCTTGGAATTCATAATGGGAATGAACTCTGCGAAGGTCTCAATGTGGACAACGTTCAATTGAACTTTGAAAGTGCTGATGAAATATTTGGCTGTTCACAAGCTGCCACAAGATACCAACTTGAAGAGGGGGGAATGGACTGTCTGTTGATGGATAAAAACATATCAGCCACAGAATCTAGTTCACTTATTGAGAGTGCCATGGAGGCATCATCATCAATCCAACAAGATTGTGTGGCTTTTCAATCATCCAAGGCTGGTGGATCAGCTAGTTTGATGCAGGCTATCAACAGTAATACAAATTGTGCACTCATGAATCCTAGCTGCAGCAGAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAACATACCATTTCAATTGCCCAACATTGTTGGTGAAAATAGTTCTGCTGAATATCAAGACTGTGGGTTATCGCCAGTGTTTCTACCGGGTGAATCCCCTTGGGAATCAAATTTGGAGGGTACATGTCCACAAGCAAGGGATAAAGCAAAAATGAGATACAATGAGAAAAAGAAGACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGTGACAAGGGGCCTCTAA 1284 0.4299 MEPLCEFCGLVRAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMDHKLSSCQGCDWNPNDCAVLGHRRLALNCYTGCPSLAEFSRIWSIVFDGNAAFCGWESLRNLPKSESCNSQCLEQPDHNGASASFGLVSEKLDEIESCVRYEPWMGQSQIIPSNPNYNTPYCKDQAFFFPQDSNQPKECPNLGIHNGNELCEGLNVDNVQLNFESADEIFGCSQAATRYQLEEGGMDCLLMDKNISATESSSLIESAMEASSSIQQDCVAFQSSKAGGSASLMQAINSNTNCALMNPSCSRNISLGFPQGQVHSNIPFQLPNIVGENSSAEYQDCGLSPVFLPGESPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRGL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00735 427 CDD Bbox1_BBX-like 4 47 - -
Cca10g00735 427 Pfam CCT motif 371 413 IPR010402 GO:0005515
Cca10g00735 427 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 2 422 - -
Cca10g00735 427 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cca10g00735 427 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca10g00735 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 422 - -
Cca10g00735 427 ProSiteProfiles CCT domain profile. 371 413 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00735 Cca-Chr10 8345283 8347902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00735 1 421 C2C2-CO-like Transcription Factor Family AT3G21880 42.118 4.05e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca10g00735 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00735 - - gmx:100804738 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00735 10 8345283 8347902 Cca10g00735 10 8345283 8347902 ECH