Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00730 ATGGATTCTATTTGCCCTATTGGGTCGCGGTGTGCCACTCAAATCTCTTCTCTTCTCACTCCTCCCTCACCTCTTCAACTTCAGGAATATTATCACAACCTTTTGTCTGCAAGGCAATGCAGTGGTATCACAGTCAAACAGGATGTCAACTTTGGAAAAGGTTTATACGCAGACAAGGACTTCAAAGAGGGGGAACTTGTTCTAAAGGACCCCATGTTTGTAGGGGTTCAACATTCCCTCAACAAGATTGATTGTTTGGTTTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACATGCAGCAACTAAGGGCCAATGAGAGTCATGGTTGTGACGTGGGAAGCTCTTCAAAACACTGCCATGACATGGATTCATCTGATGAAGAGGAGAGCACCCAGCAATGTACTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTGATGAATGGTCAATTGGTGTTGCCTTGCTCCGAGAAGTTCTCCTTGCCACCAGCTGTTCCATGCCCTCGTGGATGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTCTGATCCAGCTCATAAGGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGCAATTTCTTCTACCGTATTAAAGTACCACAAGTTAAAAGAAGCCAGTGTTGAAGAGCAAGTGAAACACAATACATCATGTGTTTCTAACCACAATAAATTATCTTTTCTTTTGGAAGCTTGGAAGCCTATATGGATGGGACACAAGAGAAGGTGGTGGGATTGTATTGCTTTGCCAGATGATGTTGATCCTTCTGATGAAGCATCATTCAGGTTGCAAATAAAAGAGTTGGCATTTGAGTCTCTCCAACTTCTTAAGACAGCCATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGGCATATCATCGGCATGTTTGAGCTGAATAATCTGGATTTGGTTGTAGCTTCTCCCGTGGAGGATTACTTTTTATATATCGATGATTTGACATATCCTAATAAGGAAGAAGTTGAGAAAATTACGCAACCAATTCTGGATGCCCTTGGTGAAAACTATTCTATTTATTGTGAAGGAACTGCATTTTTTCCTTTGCAAAGTTGCTTGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAAAGATGGCCAAGCAACAATAATTGCGCAGAGGTCCATTTGTAAAGGAGAAGAGATAACCATCTCATATGTTGATGAGGACCTTCCATTTGAAGAGAGACAGGCATCCCTAGCAGATTATGGTTTCAGATGCAGGTGTCGAAAGTGCATTGAAGAAGAGCCATAA 1455 0.4158 MDSICPIGSRCATQISSLLTPPSPLQLQEYYHNLLSARQCSGITVKQDVNFGKGLYADKDFKEGELVLKDPMFVGVQHSLNKIDCLVCSFCFRFIGSIELQIGRRLYMQQLRANESHGCDVGSSSKHCHDMDSSDEEESTQQCTSGSSKTKVPLPEGVVESLMNGQLVLPCSEKFSLPPAVPCPRGCGEAYYCSMSCAEADWESSHSLLCTGESSDPAHKEALLKFIKHANETNDIFLLAAKAISSTVLKYHKLKEASVEEQVKHNTSCVSNHNKLSFLLEAWKPIWMGHKRRWWDCIALPDDVDPSDEASFRLQIKELAFESLQLLKTAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLTYPNKEEVEKITQPILDALGENYSIYCEGTAFFPLQSCLNHSCCPNAKAFKRDEDKDGQATIIAQRSICKGEEITISYVDEDLPFEERQASLADYGFRCRCRKCIEEEP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00730 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Cca10g00730 484 Gene3D SET domain 377 483 IPR046341 -
Cca10g00730 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 15 483 IPR044237 GO:0008168
Cca10g00730 484 SUPERFAMILY HIT/MYND zinc finger-like 171 211 - -
Cca10g00730 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Cca10g00730 484 SUPERFAMILY SET domain 42 477 IPR046341 -
Cca10g00730 484 MobiDBLite consensus disorder prediction 122 136 - -
Cca10g00730 484 CDD SET_SMYD 393 479 - -
Cca10g00730 484 MobiDBLite consensus disorder prediction 118 152 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca10g00730 SET 8.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00730 - - gmx:100803651 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00730 10 8310993 8317411 Cca10g00730 10 8310993 8317411 ECH