Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca10g00729 | ATGGGAAGCCAGAGAAGCTTCAAGGTATTGAGTCTTTGCTTCTTGGCATTAGTTGCATCAACTCATGCTCAACTTCAGCTCGGTTTTTATGCCAAGAGCTGCCCAAAAGCTGAGCAAATCATCTTGAACTTTGTTCATGAGCATATCCACAATGCTCCATCACTAGCAGCTGCATTAATAAGAATGCACTTCCATGATTGTTTTGTAAGGGGATGTGATGGATCAGTTCTTCTGAACTCAACGACCAAGCAGGCTGAAAAGAATGCTCCTCCAAATCTCACTGTAAGAGGCTTTGACTTCATTGACAGAATTAAGAGCCTTGTTGAGGCTGAATGTCCTGGTGTGGTCTCTTGTGCTGATATACTAACTTTAGCTGCCAGAGACTCTATTGTAGCCACAGGTGGACCCTTTTGGAAAGTTCCAACAGGACTTGATTTGAAAGACTTGGTCCTGCTCTCTGGTGCTCACACAATTGGTGTGTCTCATTGCTCATCATTATCAAACCGCTTATTCAATTTTACTGGCAAGGGTGATCAAGACCCTTCACTAGACAGTGAATATGCTGCAAATCTGAAAAGGTTCAAGTGCAAGAACATCAATGACAACACCACAAAAATTGAGATGGATCCTGGAAGTCGCAAGACATTTGATCTTGGCTACTATAGGCAAGTGATTAAGAATAGGGGGCTATTTGAGTCAGATGCTGCGTTGTTGACAAACTCAGTTACAAAGTCTGAAGTGACACAATTGCTTCAAGGGTCACTTGAAAATTTCTTTGCTGAGTTTGCCACCTCCATGGAAAAAATGGGAAGAATTAAAGTGAAGACAGGGACAGAAGGAGAGATAAGGAAGCATTGTGCACTTGTAAATAGCCAATAA | 879 | 0.4209 | MGSQRSFKVLSLCFLALVASTHAQLQLGFYAKSCPKAEQIILNFVHEHIHNAPSLAAALIRMHFHDCFVRGCDGSVLLNSTTKQAEKNAPPNLTVRGFDFIDRIKSLVEAECPGVVSCADILTLAARDSIVATGGPFWKVPTGLDLKDLVLLSGAHTIGVSHCSSLSNRLFNFTGKGDQDPSLDSEYAANLKRFKCKNINDNTTKIEMDPGSRKTFDLGYYRQVIKNRGLFESDAALLTNSVTKSEVTQLLQGSLENFFAEFATSMEKMGRIKVKTGTEGEIRKHCALVNSQ | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca10g00729 | 292 | Gene3D | - | 29 | 143 | - | - | |
| Cca10g00729 | 292 | PANTHER | PEROXIDASE 25-RELATED | 6 | 143 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PANTHER | PEROXIDASE 25-RELATED | 143 | 290 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | CDD | secretory_peroxidase | 24 | 289 | IPR033905 | GO:0004601|GO:0042744 | |
| Cca10g00729 | 292 | Gene3D | - | 270 | 290 | - | - | |
| Cca10g00729 | 292 | ProSitePatterns | Peroxidases active site signature. | 56 | 67 | IPR019794 | GO:0004601 | |
| Cca10g00729 | 292 | SUPERFAMILY | Heme-dependent peroxidases | 24 | 290 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 148 | 158 | IPR019793 | - | |
| Cca10g00729 | 292 | PRINTS | Plant peroxidase signature | 134 | 149 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Plant peroxidase signature | 34 | 53 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Plant peroxidase signature | 96 | 109 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Plant peroxidase signature | 115 | 125 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Plant peroxidase signature | 264 | 277 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Plant peroxidase signature | 58 | 78 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | ProSiteProfiles | Plant heme peroxidase family profile. | 24 | 290 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | Pfam | Peroxidase | 43 | 143 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Haem peroxidase superfamily signature | 134 | 146 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Haem peroxidase superfamily signature | 56 | 70 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Haem peroxidase superfamily signature | 116 | 133 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PRINTS | Haem peroxidase superfamily signature | 209 | 224 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca10g00729 | 292 | PANTHER | PEROXIDASE | 6 | 143 | - | - | |
| Cca10g00729 | 292 | PANTHER | PEROXIDASE | 143 | 290 | - | - | |
| Cca10g00729 | 292 | Gene3D | Peroxidase, domain 2 | 144 | 269 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca10g00729 | Cca-Chr10 | 8307894 | 8309659 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca10g00729 | 10 | 291 | Peroxidase | AT1G05260 | 60.759 | 4.66e-144 | 406 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca10g00729 | K00430 | - | gmx:100803114 | 506.138 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca10g00729 | 10 | 8307894 | 8309659 | Cca10g00729 | 10 | 8307894 | 8309659 | ECH | |
| Cca10g00729 | 10 | 8307894 | 8309659 | Cca04g01036 | 04 | 11318596 | 11320919 | PCT |