Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00728 ATGAAAATGAGAAGCCAAAGTAGCTTCAAGGTGTTGAGTCTTTGCCTCTTGGCATTAGTTGCATCAACTCATGCTCAACTTCAGCTTGGTTTTTATGCCAAGAGTTGCCCAAAAGCTGAGCAAATCATCTTAAACTTTGTTCATGAGCATATCCACAATGCTCCATCACTAGCAGCTGCATTAATAAGAATGCACTTCCATGATTGTTTTGTAAGGGGATGTGATGGATCAGTCCTTCTGAACTCAACAAGCAATCAAGCTGAAAAGAATGCTCCTCCAAATCTCACAGTCAGAGGCTTTGATTTCATTGATAGAATAAAGAGCCTAGTTGAAGCTGAATGCCCTGGCGTGGTCTCTTGTGCTGATATACTAACTTTGGCTGCTAGGGACTCTATTGTAGCCACAGGTGGACCCTTTTGGAAAGTTCCAACTGGTAGAAGAGATGGGGTCATCTCTAACTTGGTGGAAGCCAGAAATAGCATTCCTGNNNNNNNNNNNNNNNNNAGAAATAGCATGCCTGCTCCATCTTCCAACTTTACCACCCTACAAACACTCTTTGCCAACCAAGGACTTGATTTGAAAGACTTGGTCCTTCTCTCTGGTGCTCACACAATTGGTGTGTCTCATTGCTCCTCACTTTCAAACCGCTTGTTCAATTTTACTGGCAAGGGTGATCAAGACCCTTCACTAGACAGTGAATATGCTGCAAATCTGAAAAGGTTCAAGTGCAAGAACATCAATGACAACACCACAAAAATTGAGATGGACCCTGGAAGTCGAAAGACATTTGATCTTGGCTACTATAGACAAGTGATTAAGAGAAGGGGGCTATTTGAGTCAGATGCTGCATTGTTGACAAACTCCGTTACAAAGTCTCAAGTGACACAATTGCTTCAAGGGTCACTTGAAAATTTCTTTGCCGAGTTTGCCACCTCCATGGAGAAAATGGGAAGAATTAAAGTGAAGACAGGGACAGAAGGAGAGATAAGGAAGCATTGTGCAGTTGTGAATAGCTAA 1017 0.4179 MKMRSQSSFKVLSLCLLALVASTHAQLQLGFYAKSCPKAEQIILNFVHEHIHNAPSLAAALIRMHFHDCFVRGCDGSVLLNSTSNQAEKNAPPNLTVRGFDFIDRIKSLVEAECPGVVSCADILTLAARDSIVATGGPFWKVPTGRRDGVISNLVEARNSIPXXXXXXRNSMPAPSSNFTTLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSLSNRLFNFTGKGDQDPSLDSEYAANLKRFKCKNINDNTTKIEMDPGSRKTFDLGYYRQVIKRRGLFESDAALLTNSVTKSQVTQLLQGSLENFFAEFATSMEKMGRIKVKTGTEGEIRKHCAVVNS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00728 338 CDD secretory_peroxidase 26 336 IPR033905 GO:0004601|GO:0042744
Cca10g00728 338 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Cca10g00728 338 Gene3D Peroxidase, domain 2 173 316 - -
Cca10g00728 338 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Plant peroxidase signature 254 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Plant peroxidase signature 270 287 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 Pfam Peroxidase 45 297 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PANTHER PEROXIDASE 6 337 - -
Cca10g00728 338 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 PRINTS Haem peroxidase superfamily signature 256 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Cca10g00728 338 Gene3D - 30 337 - -
Cca10g00728 338 PANTHER PEROXIDASE 25-RELATED 6 337 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 ProSiteProfiles Plant heme peroxidase family profile. 26 337 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca10g00728 338 SUPERFAMILY Heme-dependent peroxidases 26 337 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00728 Cca-Chr10 8302919 8304917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00728 12 338 Peroxidase AT1G05260 67.278 3.08e-167 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00728 K00430 - gmx:100803114 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00728 10 8302919 8304917 Cca10g00728 10 8302919 8304917 ECH