Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00725 ATGGCTGACTCAGATCGTTCTTCCACTGAAATTTCTACAGATTCCTCTGGGAATCGTGGCTCTTCAAAAGTTGAATTTTCTGAAGATGAGGAAACTCTTATCATCAGAATGTATAAACTGGTTGGGGAGAGGTGGTCTTTAATTGCTGGGAGAATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACTTCGAGATTCTCGAGTTCGAGTGAATGA 222 0.4144 MADSDRSSTEISTDSSGNRGSSKVEFSEDEETLIIRMYKLVGERWSLIAGRIPGRTAEEIEKYWTSRFSSSSE 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00725 73 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 71 - -
Cca10g00725 73 Gene3D - 25 68 - -
Cca10g00725 73 MobiDBLite consensus disorder prediction 1 26 - -
Cca10g00725 73 ProSiteProfiles Myb-like domain profile. 18 68 IPR001005 -
Cca10g00725 73 CDD SANT 25 64 IPR001005 -
Cca10g00725 73 SMART sant 22 70 IPR001005 -
Cca10g00725 73 Pfam Myb-like DNA-binding domain 23 65 IPR001005 -
Cca10g00725 73 MobiDBLite consensus disorder prediction 1 22 - -
Cca10g00725 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 72 IPR017930 -
Cca10g00725 73 SUPERFAMILY Homeodomain-like 23 68 IPR009057 -
Cca10g00725 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00725 Cca-Chr10 8266015 8266773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00725 26 69 MYB Transcription Factor Family AT5G14750 56.818 5.64e-16 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g00725 Myb_DNA-binding 7.7e-10 CL0123