Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00724 ATGAACGACCTTCTCACTGATTCATTTGTTGGTGAGGCTACTAATGGTCAGCCTTCTAGGCGAAGTGATATTGAAATGGGACAGGTTCCCAGAAGCAACTCCGATATGGGAATGGAAGCATTTAATAAGCAGATCCATGAGGCTGATAAACAAGTCGATAAGCTGTCTGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCGAAGGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAAAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAACAAAAATAGAGGCTATAAACAGAGATAACCTAGCCAATAGACAAAAGCCTGGCTGTGAGAAGGGAACTGGTGTTGATAGAGCTAGGATGAATATGACAAATGCCGTGGCTAAAAAATTCAAGGATCTCATGACGGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGCGAGGTTGTAGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCACCTCATAGAAACTGGAAACAGTGAGCAAATTTTCCAGAAAGCAATTCTAGAAGCTGGCCGAGGACAGGTTGTAAACACAGTAGAAGAAATTCAAGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAGCTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGAAGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAATGCTAAGAAACTTCAGAAGAATTCTCGAAAATGGATGTGCATTGCCATCATTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGGGTCCTCAAACCTTGGAAGAGTAGCTAG 921 0.4039 MNDLLTDSFVGEATNGQPSRRSDIEMGQVPRSNSDMGMEAFNKQIHEADKQVDKLSVLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLANRQKPGCEKGTGVDRARMNMTNAVAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVEAQGEILDNIESQVNNAVDHVQRGTTALQNAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLKPWKSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00724 306 Pfam SNARE domain 244 296 IPR000727 -
Cca10g00724 306 CDD SynN 38 195 IPR006011 GO:0016020
Cca10g00724 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 300 - -
Cca10g00724 306 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Cca10g00724 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Cca10g00724 306 SMART SynN_4 33 159 IPR006011 GO:0016020
Cca10g00724 306 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Cca10g00724 306 Gene3D - 201 301 - -
Cca10g00724 306 Coils Coil 38 75 - -
Cca10g00724 306 SMART tSNARE_6 203 270 IPR000727 -
Cca10g00724 306 Gene3D - 38 166 - -
Cca10g00724 306 MobiDBLite consensus disorder prediction 1 34 - -
Cca10g00724 306 CDD SNARE_syntaxin1-like 207 268 - -
Cca10g00724 306 PANTHER SYNTAXIN 10 300 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00724 Cca-Chr10 8223609 8227801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00724 1 303 SNARE and Associated Proteins AT3G03800 63.696 7.02e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00724 K08486 - gmx:100807404 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00724 10 8223609 8227801 Cca10g00724 10 8223609 8227801 ECH