Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00717 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCTTCGATGATTGGAAGAAACGGCAACGTTGGTGGCTTTGGATTATCTTCAGGGCTCTCTCTTGGCCAGATTGAAAACCATAAGGCTTCGGAAACTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTAGTCATCAGCTTCTCCCCCTTGACATGCCTCAGAATTCAGAGAGCGATGTCCCAAGAATCCGCGAAGATGACTTTGACAGTGCCACCAAGTCTGGTAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGCCCAAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAATCATTCTTTAAGGAGTGTCCTCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACATGAGCGCCATGAGAACACACAGCTGAGAACTGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTTCAGGGAAGCTCTCAGCAATGCCTCGTGTCCCAACTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTCAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCAAAGTACGTGGGGAAGCCTGTGGTGAGCTATCCACTTCTTTCTCCTAATTCATCTGTGCCTCCTCGTCCACTGGAGCTTGGGATTGGTGGTGGTTTTGGTGGCCAAGCTGGAGGCATTGGTGGGGACATGTATGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATCAGTGGACCCACCGAAGCTGATAAGCCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCACAAATGGGTGAGCCTCTTTGGTTAACTTCCCTTGATGGCACTGCCACTGTGCTCAATGAGGACGAGTACATCAGGTCCTTTCCTCGTGGGATTGGTCCTAAACCCGCTGGCTTCAAGTGTGAAGCTTCACGAGAAACTGCTGTTATTATCATGAACCATGTTAACCTTGTCGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGCATCGTCTCAAGAGCCATGACTTTGGAAGTGTTGTCAACAGGAGTGGCGGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAATTACAAGTACCCTCACCTCTTGTGCCAACTCGAGAGAGCTATTTTGTAAGGTACTGTAAGCAGCATGGCGAAGGGACTTGGGCAGTAGTGGACGTGTCCTTGGATAATTTGCGTCCTAGTCCTTCAGCCAGAAGTAGAAGAAGGCCCTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATATGGGTTGAGCATGTAGAAGTGGATGACAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCTCGGGGCATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGACCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGCGCTGGAGTGAGTGCATCCACTGCACACACATGGACAACACTCTCTGGAACTGGTGCTGATGATGTAAGGGTCATGACTCGTAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGCATCGTTCTCAGTGCTGCAACGTCTTTTTGGCTTCCAGTGTCACCGAAAAGGGTTTTTGAATTCCTACGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGACGAGACACTGGAAACTGTGTCTCCCTACTTCGAGTGAATAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGTGCAGACTCAACGGGGTCTTTCGTGATATATGCTCCTGTGGACATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCTGACTACGTGGCACTTCTCCCTTCAGGATTTGCTATACTCCCAGATGGGACCACTGCACATGGAGGTGGCATTGGTGACACTGGACATGGTGGCTCTCTCTTGACTGTGGCATTCCAAATATTGGTTGATTCAGTTCCAACAGCTAAGCTTTCTCTTGGATCCGTTGCTACTGTCAACAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTTCTGAACCTGTTGCTTGA 2355 0.4803 MPAGIMIPARNMPSMIGRNGNVGGFGLSSGLSLGQIENHKASETQRSVEMFQPNLMEASHQLLPLDMPQNSESDVPRIREDDFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPNSSVPPRPLELGIGGGFGGQAGGIGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTSLDGTATVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVIIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPSPSARSRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGDTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSSEPVA 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00717 784 Gene3D - 355 521 IPR023393 -
Cca10g00717 784 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Cca10g00717 784 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 68 780 IPR042160 -
Cca10g00717 784 ProSiteProfiles START domain profile. 295 527 IPR002913 GO:0008289
Cca10g00717 784 SUPERFAMILY Bet v1-like 295 526 - -
Cca10g00717 784 SMART HOX_1 107 170 IPR001356 GO:0003677
Cca10g00717 784 Pfam START domain 305 524 IPR002913 GO:0008289
Cca10g00717 784 CDD START_ArGLABRA2_like 299 523 - -
Cca10g00717 784 SMART START_1 304 524 IPR002913 GO:0008289
Cca10g00717 784 CDD homeodomain 109 167 IPR001356 GO:0003677
Cca10g00717 784 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Cca10g00717 784 Coils Coil 172 192 - -
Cca10g00717 784 Gene3D - 94 183 - -
Cca10g00717 784 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 68 780 - -
Cca10g00717 784 MobiDBLite consensus disorder prediction 82 118 - -
Cca10g00717 784 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Cca10g00717 784 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Cca10g00717 784 SUPERFAMILY Bet v1-like 544 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00717 Cca-Chr10 8118152 8125606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00717 50 781 Homeobox Transcription Factor Family AT1G05230 77.612 0.0 1167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca10g00717 START 4.2e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00717 K09338 - gmx:100809556 1424.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00717 10 8118152 8125606 Cca10g00717 10 8118152 8125606 ECH
Cca10g00717 10 8118152 8125606 Cca04g01025 04 11154935 11160263 PCT