Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00715 ATGGATGGAAAAATGTTTGTGGGGAGGGTGTTGTTGGTCTCGGTTTTCTGCTTGTGGATTCCCTCTCTGGTGGTGGAGGGAAGGAATGGAACTACCATCACAAACTCTACTAATTCTTCAACACCAAGAGTTTTAAGAGTTGGAGCTTTGTTTACTCTTAATTCTATAATTGGAAGGTCGGCAAAACCTGCACTTATGGCTGCTTTTGATGATGTTAATGATAATTCGAACGTTCTCCCTGGCGTTAAGCTGGAGGTTGTTTTACATGATACAAATTGCAGTGGGTTTGTTGGAACAATGGAAGCTTTGCAATTGATGGAGGATGAAGTGGTTGCTGCCATTGGTCCACAGTCCTCAGGAATAGCACATGTCATCTCTCATGTTGTCAATGAACTCCATGTCCCTCTTGTTTCATTTGGGGCAACAGACCCATCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGATTATTATCAGATGTATGCAATTGCAGACTTGGTTGATTACTATAGATGGAGGGAGGTAATTGCCATATATGTAGATGATGATAATGGAAGGAATGGAATTTCAGTATTGGGAGATGCTTTGGCAAAGAAACGTGCCAAGATCTCTTATAAGGCTCCTTTCCCTCCTGGTGCCCTCAAGAAAGATATCAGTGACTTGTTAAATGGAGTGAACCTAATGGAATCACGGGTTTTTGTTCTTCATGTTAATCCTGATAATGGTTTGAACATTTTTTCTCTTGCTGAGAAGCTAGGAATGATGAACAGTGGCTATGTGTGGATTGCAACAGATTGGCTTGCTTCAGCACTTGATTCATTAGAGCCAGTTGATCCTAAAACTATGAATCTCCTTCAAGGGGTTTTGGCTTTGCGTCATCACACTCCTGATACTAATGAAAAGAAGAGTTTTCTCTCCAGGATGAAGAGACTCAAAGACAAGGAGACTCCAAGCTTCAATTCCTATGCATTGTATGCATATGATTCTGTGTGGTTAGTAGCTCGTGCTCTTGATGCCTTTCTCAAAGAAGGTGGCATGGTATCTTTCTCCTCTGACCCTAAGTTGCGCGACACAAATGGAAGCATGTTGCATCTAGAATCGCTTCGTATTTTTGGAGATGGTGCCAAGTTTCTCGAGGCAATTTTGAGAACCAACTTCACTGGTCTGACTGGTGAAGTTCAGTTTGATTTGGAAAAGAATAGAATGCATCCAGCATATGATATCTTGAACATTGGTGGATCCGGAATGAGGAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAAATTTTGTATAAGAAACCACCTAACACTTCAACAAGCAGCCAACAACTGTATAGTGTTATATGGCCTGGAGAAACTACAAATAAACCAAGAGGGTGGGTGTTCCCCAACAATGGAAGGCCACTGAGAATAGCAGTGCCTAATAGAGTAAGTTACTTGGAATTTGTTTCTAAAGACAAGAACCCCCCGGGAGTAAGAGGCTATTGCATTGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCACGAAAATACATATTATTTGGACCTGGTGATAGAAATCCGAGCTATGATGACCTTGCAAGTCAGGTTGCACTAAATAACTTTGATGCTGCAGTTGGTGATGTTACAATTGTCCCAAACAGGACAAGGTTTTTGGATTTTACTCAACCTTACATGGAATCAGGGCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAACCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATATTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGCCACAATCCGGAGTTTCGTGGTAGACCAAAGAAACAACTCATGACAGTCTGTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGGAGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACGGTGCAGCAACTTTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATTCAAGAAGGTTCATTTGCAAGGAAGTATTTGACTGAGGAACTCAATATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATATATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTGGCCGTTGTTGATGAGCTTCCTTATATTGAAATCTTAATGTCAAGTACTAATTGTAAGTTCAGAACCGTTGGCCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCAGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAGATCCATGATAAATGGCTTTTAAAACATGATTGTTCTGTACAAGATAATGTAGATTCAAATGAACTATCTCTTAGTAGCTTCTGGGGTCTCTTTCTCATATGTGGCATTGCATGTGTCCTTTCTTTGATTGCATTCTCCATCAAAGTGTTCTGCCAATACAACAAATTCAACCCAGAACCTGAGCAAGATGACCAGGAAATTTCACCAACGAGGCCTAAAGATAAAAGGCTTTTCCGATCCACCACTAGCTTCAGGGAATTGATGTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAGGCAGAAGAGTAAGAAAAGAAGACGCAGCCTCAGCTCAGATGGTCAATCTAGTTCACCAATCTAA 2817 0.4129 MDGKMFVGRVLLVSVFCLWIPSLVVEGRNGTTITNSTNSSTPRVLRVGALFTLNSIIGRSAKPALMAAFDDVNDNSNVLPGVKLEVVLHDTNCSGFVGTMEALQLMEDEVVAAIGPQSSGIAHVISHVVNELHVPLVSFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREVIAIYVDDDNGRNGISVLGDALAKKRAKISYKAPFPPGALKKDISDLLNGVNLMESRVFVLHVNPDNGLNIFSLAEKLGMMNSGYVWIATDWLASALDSLEPVDPKTMNLLQGVLALRHHTPDTNEKKSFLSRMKRLKDKETPSFNSYALYAYDSVWLVARALDAFLKEGGMVSFSSDPKLRDTNGSMLHLESLRIFGDGAKFLEAILRTNFTGLTGEVQFDLEKNRMHPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYSVIWPGETTNKPRGWVFPNNGRPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRKYILFGPGDRNPSYDDLASQVALNNFDAAVGDVTIVPNRTRFLDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFIFVGTVVWILEHRHNPEFRGRPKKQLMTVCWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSSTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHDCSVQDNVDSNELSLSSFWGLFLICGIACVLSLIAFSIKVFCQYNKFNPEPEQDDQEISPTRPKDKRLFRSTTSFRELMYFVDKKEKEIKEILRQKSKKRRRSLSSDGQSSSPI 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00715 938 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Cca10g00715 938 SUPERFAMILY Periplasmic binding protein-like II 455 822 - -
Cca10g00715 938 CDD PBP1_GABAb_receptor_plant 46 437 IPR044440 -
Cca10g00715 938 Gene3D - 591 716 - -
Cca10g00715 938 Coils Coil 906 926 - -
Cca10g00715 938 Gene3D - 475 590 - -
Cca10g00715 938 PIRSF IGluLR_plant 4 937 IPR017103 -
Cca10g00715 938 Gene3D - 64 408 - -
Cca10g00715 938 PANTHER GLUTAMATE RECEPTOR 3.4 34 921 - -
Cca10g00715 938 Pfam Bacterial extracellular solute-binding proteins, family 3 537 822 IPR001638 -
Cca10g00715 938 SUPERFAMILY Periplasmic binding protein-like I 39 471 IPR028082 -
Cca10g00715 938 Gene3D - 717 824 - -
Cca10g00715 938 Pfam Receptor family ligand binding region 62 417 IPR001828 -
Cca10g00715 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Cca10g00715 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Cca10g00715 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Cca10g00715 938 MobiDBLite consensus disorder prediction 918 938 - -
Cca10g00715 938 CDD GluR_Plant 478 821 - -
Cca10g00715 938 Pfam Ligand-gated ion channel 823 853 IPR001320 GO:0015276|GO:0016020
Cca10g00715 938 Gene3D - 160 433 - -
Cca10g00715 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00715 Cca-Chr10 8105180 8111279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00715 42 788 Ion Channels AT1G05200 68.675 0.0 1109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00715 K05387 - gmx:100783715 1651.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00715 10 8105180 8111279 Cca10g00715 10 8105180 8111279 ECH
Cca10g00715 10 8105180 8111279 Cca04g01022 04 11127795 11133797 PCT