Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00714 ATGAAGAAAATTATGGTTTTGCACCTTGTGACATGGATTTGGGTGTGCTGTGTTGCTCACAGCAGAAGGCCCAGCAGTGTGAACATTGGAGCGGTTTTTGCTTTCGATTCGGTCATTGGTAGAGTTGCGAAGGAGGCTATGCAAATGGCCGTTTCTGATGTTAATGCGGATCCCACAGTTCTCAAGGGAACCAAATTGAACTTGTTAATGAAGGATGCCATGTGCAATGCTTTTCTGGGAGCGATTGGAGCTTTTCAGGTACTTGAGAAAGGGGTTGCTGCCATAATTGGTCCACAGTCATCTGCTGTAGCTCACACGATTTCTCAAATTGCTGATGCTCTTCAAGTTCCCCTTGTTTCATATGCTGCCACTGATCCAACCCTGTCCTCCCTCCAGTTTCCTTATTTTATTCGCACTACACAAAGTGACTTGGCACAAATGACTGCAATGGCTGATCTTATTGACTTTTATGGATGGAAAGAGGTCATTGTTGTATTCTTGGACGATGATTATGGAAGAAATGGAATATCTGCTTTGAGTGATGAACTTGAAAAAAGGAGATTGAAAATTTCTTATAAACTGCCTTTGAGTATTAAGTTTGATCTGGATGAAATCACTAACTTGCTCAATCAATCCAAAGTGTTTGGTCCTCGTGTGTATGTTGTTCATGTCAACCCTGATCCAAGATTGAGAATTTTTTCCGTTGCCCATAAACTTCAAATGATGGCCCAGGATTATGTATGGCTTGTAACGGATTGGCTCTCTGCTACACTAGATTCATTATCCCCAGTGAACCAGACTTCTTTTAGTGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCCGGAATCCAGAAAAAAGACAGCTTTTGCTTCTCGATGGATAAAAATGCAGAAAGAAGGATTAGCAAATACTAGTTTGACCACCTATGGATTTTATGCTTATGATACAGTTTGGGCAGTTGCACGTTCAATCGATAAATTCATCAAACTACATAATAATATTACCTTCTTGCTTCATGATAACTATAAGGTATCTCATACAGTAGGAATTGGTATTAAGCTTGACAAGCTCAAAGTCTTGGCTGGTGGATCTGAACTGGTTGAAATACTATTACAATCAAATTTTTCTGGAGTGAGTGGTCAACTTCAGTTTAATTCTGACAGAAACATTGTAAGTGGTGGTTATGATATTATCAATGTCAATCGGATGGCAATTACTGGGGTTGGTTTTTGGTCTAATTATTCAGGATTTTCAGTTGTACCCCCTGAAACTCTTAAAAAAAGGAAACATAATAGGTTTTCGAAATATCAGAAGCTAGGCAATATTACTTGGCCTGGTGGAAAGACAGAACGACCTCGTGGCTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCGAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAACTGCAAGACAGTCATCAAATTGAGGGGTACTGCATCGATGTCTTCAAGAAAGCCCTAGAATTTATACCATATGAAGTTCCTTATGTATTCAAGCCTTTCGGGAATGGTAAAGCAAATCCTAATTATGATGCACTTGTGAAAATGATTGCTGAAAATGTATATGATGCAGTTGTTGGAGACATTGCAATTGTGACAAACCGTACTAGGATGGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAGAGCAAGATCAAATGCTTGGGTGTTTCTCAAACCATTTTCAGCAGATATGTGGTGTGCCACTGCTGCATCATTTATAGTGGTTGGAGTGGTTATATGGATTCTTGAGCATCGAGTCAACAATGACTTCCGTGGTCCTCCTAAGAAGCAACTTGTGACGATGTTAATGTTCAGCCTCTCAACGCTGTTTAAGAAAAATCAGGAAAATACTGTGAGCTCACTTTCTAAAATGGTCATGATAGTCTGGCTTTTTCTGTTGATGGTGATCACGGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACAGGAATTGATAGCTTGATTAGTAGTAACTGGCCTATTGGATTCCAAGTAGGGTCATTTGCTTACAGCTATATGGCAGAAAATCTTTATATACCAAAATCAAGACTCATTTCCCTTGGCTCCCCTGAGGAATATGCTTTAGCGCTGCAGAAGGGGCCGTCTGGTGGAGGGGTGGCAGCTATCGTGGATGAGCTTCCATATGTCGAGTTATTTCTTTCAAAGGAAACTGATTATGGTATTATTGGTCAGCCATTCGCCAGAAGCAGTTGGGGATTTCAATTTTGA 2328 0.4064 MKKIMVLHLVTWIWVCCVAHSRRPSSVNIGAVFAFDSVIGRVAKEAMQMAVSDVNADPTVLKGTKLNLLMKDAMCNAFLGAIGAFQVLEKGVAAIIGPQSSAVAHTISQIADALQVPLVSYAATDPTLSSLQFPYFIRTTQSDLAQMTAMADLIDFYGWKEVIVVFLDDDYGRNGISALSDELEKRRLKISYKLPLSIKFDLDEITNLLNQSKVFGPRVYVVHVNPDPRLRIFSVAHKLQMMAQDYVWLVTDWLSATLDSLSPVNQTSFSVLQGVVGLRQHIPESRKKTAFASRWIKMQKEGLANTSLTTYGFYAYDTVWAVARSIDKFIKLHNNITFLLHDNYKVSHTVGIGIKLDKLKVLAGGSELVEILLQSNFSGVSGQLQFNSDRNIVSGGYDIINVNRMAITGVGFWSNYSGFSVVPPETLKKRKHNRFSKYQKLGNITWPGGKTERPRGWVIADNTKPLRIGVPKRASFVEFVTELQDSHQIEGYCIDVFKKALEFIPYEVPYVFKPFGNGKANPNYDALVKMIAENVYDAVVGDIAIVTNRTRMVDFSQPFASSSLVIVAPINRARSNAWVFLKPFSADMWCATAASFIVVGVVIWILEHRVNNDFRGPPKKQLVTMLMFSLSTLFKKNQENTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLISSNWPIGFQVGSFAYSYMAENLYIPKSRLISLGSPEEYALALQKGPSGGGVAAIVDELPYVELFLSKETDYGIIGQPFARSSWGFQF 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00714 775 PANTHER GLUTAMATE RECEPTOR 3.7 10 774 - -
Cca10g00714 775 CDD PBP1_GABAb_receptor_plant 28 423 IPR044440 -
Cca10g00714 775 Pfam Ligated ion channel L-glutamate- and glycine-binding site 480 567 IPR019594 GO:0004970|GO:0016020
Cca10g00714 775 Pfam Ligand-gated ion channel 586 690 IPR001320 GO:0015276|GO:0016020
Cca10g00714 775 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Cca10g00714 775 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Cca10g00714 775 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 231 254 - -
Cca10g00714 775 Pfam Receptor family ligand binding region 44 404 IPR001828 -
Cca10g00714 775 SUPERFAMILY Periplasmic binding protein-like I 22 458 IPR028082 -
Cca10g00714 775 PRINTS Metabotropic glutamate GPCR signature 40 55 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cca10g00714 775 PRINTS Metabotropic glutamate GPCR signature 146 162 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cca10g00714 775 PRINTS Metabotropic glutamate GPCR signature 162 179 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cca10g00714 775 PIRSF IGluLR_plant 1 775 IPR017103 -
Cca10g00714 775 Gene3D - 460 577 - -
Cca10g00714 775 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 774 - -
Cca10g00714 775 SUPERFAMILY Periplasmic binding protein-like II 444 774 - -
Cca10g00714 775 Gene3D - 142 419 - -
Cca10g00714 775 SMART GluR_14 465 773 IPR001320 GO:0015276|GO:0016020
Cca10g00714 775 Gene3D - 45 394 - -
Cca10g00714 775 Gene3D - 578 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00714 Cca-Chr10 8084995 8091190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00714 22 775 Ion Channels AT2G32400 58.333 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00714 K05387 - gmx:100784247 1385.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00714 10 8084995 8091190 Cca10g00714 10 8084995 8091190 ECH
Cca04g01022 04 11127795 11133797 Cca10g00714 10 8084995 8091190 PCT