Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca10g00706 | ATGGCGAGAACGGTGTCCAACAACAGCAGCAACGATGAAAGAGTGGAGGATGGCGAGGTGAGAAGTCGCGTGAGGAAGGGGCCGTGGACCCCAGCGGAAGACGCGATTCTGACGGAGTATGTCAAGAAGCATGGCGAAGGGAATTGGAACTCCGTGCAGAAGAATTCTGGCTTGTTCAGGTGCGGCAAAAGTTGCAGACTCAGATGGGCCAATCATCTCAGGCCCAATTTGAAGAAAGGCGCCTTCTCTCCAGAGGAAGAACAAATCATCATCGACCTTCATGCCAAGCTCGGAAACAAATGGGCCCGAATGGCCGCACAGTTACCTGGTAGGACCGACAATGAAATCAAGAACTTTTGGAATACCAGAATGAAAAGGCGCCAGAGAGCAGGGTTACCCCTTTATCCTCCTGAAGTTCATGCAGAAGCCACTGCATACCATCGACAACAGCATCGCTACATAGAACAACAACCTCATTCATCGCCGTCTTTTTCTTTACTTCTATCTTCTTGTTACCCCAAGAAGCTCAATGATCCAAACCAAACCCATCATTCCAATGCGAACCTGCTTCAAAACCAGCCTGATGCTGCTAACTGTTACATCAATCCTAGCCAGCAGTTCAAGTTTTCCAATGAAAATAGTGGAAGCAATGGAAACCTTGCTTTGCCATTATCTCCTCTTTCTCCATTTGGATCATCCTCCTCCAACCTTCTCAATAACCAAAGTTTTGCTCCTCCTAGTGCTTCTGCTGCAACTGATTCACGTGATTACCAAAGCTATGGTGATCATGGTGGCTTCATGGCGGGGTCTCCGTATGAACCCTTTCCTTTGGTGCACGGCTCCACCACTGACATCTCTTCCAGCCAAACAGCAACCCCTGCTTCATCCTATGCTAGTGGTGTTGATGGCTTGATGGGGGCTTCAAGCATGATTAATAATAATAATGAGTGCTATGAAGTTGCACCATTGTCTCCTCAGGGAAACAGTGGCCTGTTGGATGCCCTGGTGATGGAAGCCAAAGGACTTTCTCACAATGACAAGTCAAAGAGTGAGGAGGGTTCAACTTTGGCTGGGAAGTCTTATAAGAGAAAAATCATGGACTATGCAGAGGAGGAGGGCACAATGTCAGCTATGAAGAAGAGCAGCAGTGGCAATGGCAACCCTACTAATAAAAGCCAGAGGGATGATGCTATTAGTTCCTCTCAATTGTCAAAAGGGAAGGGAGTAATTGGGTGGGATCCGTTGGAAGAGATGAATGCGATGGACGGTGATTTGGTCAGCCTGCTGAACCATTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGTAGAGGGGAGAGTCAGTCATTGGGACTTGAAAACCAACCCAAAGCCTCAACACCTGTCCCCACTGATCAAGAATCTGCTTGGACTCTTGGAACTTGCTGGAACAACATGCCTGGCATATGCTAA | 1452 | 0.4793 | MARTVSNNSSNDERVEDGEVRSRVRKGPWTPAEDAILTEYVKKHGEGNWNSVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQIIIDLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVHAEATAYHRQQHRYIEQQPHSSPSFSLLLSSCYPKKLNDPNQTHHSNANLLQNQPDAANCYINPSQQFKFSNENSGSNGNLALPLSPLSPFGSSSSNLLNNQSFAPPSASAATDSRDYQSYGDHGGFMAGSPYEPFPLVHGSTTDISSSQTATPASSYASGVDGLMGASSMINNNNECYEVAPLSPQGNSGLLDALVMEAKGLSHNDKSKSEEGSTLAGKSYKRKIMDYAEEEGTMSAMKKSSSGNGNPTNKSQRDDAISSSQLSKGKGVIGWDPLEEMNAMDGDLVSLLNHFPLEMPMPEWYRRGESQSLGLENQPKASTPVPTDQESAWTLGTCWNNMPGIC | 483 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 278 | 297 | - | - | |
Cca10g00706 | 483 | CDD | SANT | 81 | 122 | IPR001005 | - | |
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 10 | 27 | - | - | |
Cca10g00706 | 483 | CDD | SANT | 28 | 73 | IPR001005 | - | |
Cca10g00706 | 483 | ProSiteProfiles | Myb-like domain profile. | 74 | 124 | IPR001005 | - | |
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 280 | 297 | - | - | |
Cca10g00706 | 483 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 21 | 73 | IPR017930 | - | |
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 376 | 406 | - | - | |
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 373 | 406 | - | - | |
Cca10g00706 | 483 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 74 | 128 | IPR017930 | - | |
Cca10g00706 | 483 | SMART | sant | 25 | 75 | IPR001005 | - | |
Cca10g00706 | 483 | SMART | sant | 78 | 126 | IPR001005 | - | |
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 238 | 256 | - | - | |
Cca10g00706 | 483 | SUPERFAMILY | Homeodomain-like | 23 | 120 | IPR009057 | - | |
Cca10g00706 | 483 | PANTHER | TRANSCRIPTION FACTOR MYB33-RELATED | 9 | 207 | - | - | |
Cca10g00706 | 483 | PANTHER | TRANSCRIPTION FACTOR MYB33-RELATED | 178 | 483 | - | - | |
Cca10g00706 | 483 | Pfam | Myb-like DNA-binding domain | 29 | 88 | - | - | |
Cca10g00706 | 483 | Gene3D | - | 26 | 78 | - | - | |
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cca10g00706 | 483 | Gene3D | - | 81 | 127 | - | - | |
Cca10g00706 | 483 | PANTHER | TRANSCRIPTION FACTOR MYB28-LIKE | 9 | 207 | - | - | |
Cca10g00706 | 483 | PANTHER | TRANSCRIPTION FACTOR MYB28-LIKE | 178 | 483 | - | - | |
Cca10g00706 | 483 | MobiDBLite | consensus disorder prediction | 238 | 265 | - | - | |
Cca10g00706 | 483 | ProSiteProfiles | Myb-like domain profile. | 21 | 73 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca10g00706 | Cca-Chr10 | 7956357 | 7961031 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca10g00706 | 24 | 144 | MYB Transcription Factor Family | AT2G32460 | 83.471 | 7.91e-72 | 234 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Cca10g00706 | Myb_DNA-bind_6 | 1.5e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca10g00706 | K09422 | - | gmx:100798860 | 690.263 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca10g00706 | 10 | 7956357 | 7961031 | Cca10g00706 | 10 | 7956357 | 7961031 | ECH |