Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00706 ATGGCGAGAACGGTGTCCAACAACAGCAGCAACGATGAAAGAGTGGAGGATGGCGAGGTGAGAAGTCGCGTGAGGAAGGGGCCGTGGACCCCAGCGGAAGACGCGATTCTGACGGAGTATGTCAAGAAGCATGGCGAAGGGAATTGGAACTCCGTGCAGAAGAATTCTGGCTTGTTCAGGTGCGGCAAAAGTTGCAGACTCAGATGGGCCAATCATCTCAGGCCCAATTTGAAGAAAGGCGCCTTCTCTCCAGAGGAAGAACAAATCATCATCGACCTTCATGCCAAGCTCGGAAACAAATGGGCCCGAATGGCCGCACAGTTACCTGGTAGGACCGACAATGAAATCAAGAACTTTTGGAATACCAGAATGAAAAGGCGCCAGAGAGCAGGGTTACCCCTTTATCCTCCTGAAGTTCATGCAGAAGCCACTGCATACCATCGACAACAGCATCGCTACATAGAACAACAACCTCATTCATCGCCGTCTTTTTCTTTACTTCTATCTTCTTGTTACCCCAAGAAGCTCAATGATCCAAACCAAACCCATCATTCCAATGCGAACCTGCTTCAAAACCAGCCTGATGCTGCTAACTGTTACATCAATCCTAGCCAGCAGTTCAAGTTTTCCAATGAAAATAGTGGAAGCAATGGAAACCTTGCTTTGCCATTATCTCCTCTTTCTCCATTTGGATCATCCTCCTCCAACCTTCTCAATAACCAAAGTTTTGCTCCTCCTAGTGCTTCTGCTGCAACTGATTCACGTGATTACCAAAGCTATGGTGATCATGGTGGCTTCATGGCGGGGTCTCCGTATGAACCCTTTCCTTTGGTGCACGGCTCCACCACTGACATCTCTTCCAGCCAAACAGCAACCCCTGCTTCATCCTATGCTAGTGGTGTTGATGGCTTGATGGGGGCTTCAAGCATGATTAATAATAATAATGAGTGCTATGAAGTTGCACCATTGTCTCCTCAGGGAAACAGTGGCCTGTTGGATGCCCTGGTGATGGAAGCCAAAGGACTTTCTCACAATGACAAGTCAAAGAGTGAGGAGGGTTCAACTTTGGCTGGGAAGTCTTATAAGAGAAAAATCATGGACTATGCAGAGGAGGAGGGCACAATGTCAGCTATGAAGAAGAGCAGCAGTGGCAATGGCAACCCTACTAATAAAAGCCAGAGGGATGATGCTATTAGTTCCTCTCAATTGTCAAAAGGGAAGGGAGTAATTGGGTGGGATCCGTTGGAAGAGATGAATGCGATGGACGGTGATTTGGTCAGCCTGCTGAACCATTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGTAGAGGGGAGAGTCAGTCATTGGGACTTGAAAACCAACCCAAAGCCTCAACACCTGTCCCCACTGATCAAGAATCTGCTTGGACTCTTGGAACTTGCTGGAACAACATGCCTGGCATATGCTAA 1452 0.4793 MARTVSNNSSNDERVEDGEVRSRVRKGPWTPAEDAILTEYVKKHGEGNWNSVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQIIIDLHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVHAEATAYHRQQHRYIEQQPHSSPSFSLLLSSCYPKKLNDPNQTHHSNANLLQNQPDAANCYINPSQQFKFSNENSGSNGNLALPLSPLSPFGSSSSNLLNNQSFAPPSASAATDSRDYQSYGDHGGFMAGSPYEPFPLVHGSTTDISSSQTATPASSYASGVDGLMGASSMINNNNECYEVAPLSPQGNSGLLDALVMEAKGLSHNDKSKSEEGSTLAGKSYKRKIMDYAEEEGTMSAMKKSSSGNGNPTNKSQRDDAISSSQLSKGKGVIGWDPLEEMNAMDGDLVSLLNHFPLEMPMPEWYRRGESQSLGLENQPKASTPVPTDQESAWTLGTCWNNMPGIC 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00706 483 MobiDBLite consensus disorder prediction 278 297 - -
Cca10g00706 483 CDD SANT 81 122 IPR001005 -
Cca10g00706 483 MobiDBLite consensus disorder prediction 10 27 - -
Cca10g00706 483 CDD SANT 28 73 IPR001005 -
Cca10g00706 483 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Cca10g00706 483 MobiDBLite consensus disorder prediction 280 297 - -
Cca10g00706 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Cca10g00706 483 MobiDBLite consensus disorder prediction 376 406 - -
Cca10g00706 483 MobiDBLite consensus disorder prediction 373 406 - -
Cca10g00706 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Cca10g00706 483 SMART sant 25 75 IPR001005 -
Cca10g00706 483 SMART sant 78 126 IPR001005 -
Cca10g00706 483 MobiDBLite consensus disorder prediction 238 256 - -
Cca10g00706 483 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Cca10g00706 483 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 207 - -
Cca10g00706 483 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 178 483 - -
Cca10g00706 483 Pfam Myb-like DNA-binding domain 29 88 - -
Cca10g00706 483 Gene3D - 26 78 - -
Cca10g00706 483 MobiDBLite consensus disorder prediction 1 27 - -
Cca10g00706 483 Gene3D - 81 127 - -
Cca10g00706 483 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 9 207 - -
Cca10g00706 483 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 178 483 - -
Cca10g00706 483 MobiDBLite consensus disorder prediction 238 265 - -
Cca10g00706 483 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00706 Cca-Chr10 7956357 7961031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00706 24 144 MYB Transcription Factor Family AT2G32460 83.471 7.91e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00706 Myb_DNA-bind_6 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00706 K09422 - gmx:100798860 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00706 10 7956357 7961031 Cca10g00706 10 7956357 7961031 ECH