LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00702	ATGGAGCTTCGTTCTCGTCGGCGCCTTTCCAATACTACAGTTTCTGGGAAGGAGGAGCAGCCTGAGGATGATGCTGTTGTGAAAGATGAAACTAATGGCGGGTGCGGTAACAATAAAGATAAAGGTGTTTCTGTTGTATCttcagattcggatatagtttctgatcctgattcaggttctgacttcGAAGATGAAGAATTGGGTGGGTGCGTTCTACCTGACTTGAATGAAGAACCATATTCAAGCATTAGTGTTTATGATTTAGAAGATTATGCTTCTGATTCGTCTGATGGTGGCAAGCCTTTGTCCAAAAGGGAGAATGTGTGGGGGTGCAAACGGAGAAGAACAGGTCCCAACCCAGAAATTGGAGAACCAAGTGATGTGGTTGAAGTGGTGGAACACAAAGATGGTGATGATGATGAATACTCTATGGTTCAGCAGCGATCAGTTCCCTCTGCTTCGAGGGAAACTAAGAAGAGGAAATATACAAGAAGAGGCAAAAAAGGAGATTCTCGGCCAGTGTTGTTGTGGAATGCGTGGGAAGAGGAACAAGAAAGATGGATTGATAAGAATATATCAGAAGATGCTGACTTAGATAATCATGGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGTTCTGAGAGTAGAGGCGGAATACTTGCAGATGAAATGGGAATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTAGCCAAACGTGAATTTGAAGAAAGGAGTTCTGAACCAGATCAATCCATACCAAGTTCATCCAGATTGTTACCTGTGATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATCGCTTTACTTTAAAAGGGAGCACCAAGGTGCTAATTTATCATGGGGCTAATAGATGGAAGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATCACTACATACTCTGTCGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGGTGCCCATATTGTGGAAAATTATTTTTGCCAAGTAAGTTGAGATATCATCAAAACTATTTTTGTGGACCTGATGCTATTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGTGTAGTTTAGTTACTAAAGGGAAGACCAAGGTATGTGACGGTAACAAGATGTCAAAGGGTTCTAAAAAGAAAAAGGAAGAAGAAACGGACATGATTATGGAGGATACAGAGGCTGTCCCTGTACGTGCAGATAAGTCACTTCTGCATGCTGTAAAATGGCAGCGAATTATATTGGATGAGGCGCACTATATAAAATCTAGGCATTGTAACACCGCTAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCGTTAAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAATTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAAGATTCTTGATCATAGCTCTAAAGAATGTTCAGGCTGCATTCACAGTTCTGTGAGGCATTTCTGTTGGTGGAATAAGTATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGTAGAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACTAAAATTGGGAGGGCTGCTGATCTTGCGCTTCCGCCTAGAATTGTTTCATTGAGAAAGGACTGTCTGGATATTAAAGAGCAAGACTATTATGAATCGTTATATAATGAAAGTCAGGCACAATTTAATACATATGTTGAAGCAAATACTCTGATGAATAATTATGCCCATATATTTGACCTCCTCACCCGTCTGCGACAGGCCGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAATGGAGTTATGGAAAGTAATGCTACTGTTGAACAGGTTTGCGGCATTTGCCATGAGCCAGTAGAAGATGTTGTAGTTACCTCTTGTGAGCATGTATTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGGCAAGCATCATGCCCTACGTGCTCTAAATTACTTACTGTTGATTTAACGTCCAACAAGGATGTTGGGGATCAGGCTTACAAAACAACAATTAAGGGATTCAGATCCTCAAGCATTTTGAATAGAATTCGACTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCTTTGAGAGAAGAAATAAGGATCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAATTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTCGGAGATTCACTGATGATCCAGACTGCAAAATTTTTCTCATGAGTTTGAAGGCTGGAGGTGTTGCACTCAATTTGACTGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCTGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGGATTGTGAGGTTTGTCATTGAGAACACAATCGAGGAGAGAATTCTGAAGCTGCAAGAGAAGAAGGAATTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACTGAGTCAGACTTGAGATTTTTATTTGTTACCTAA	2787	0.4055	MELRSRRRLSNTTVSGKEEQPEDDAVVKDETNGGCGNNKDKGVSVVSSDSDIVSDPDSGSDFEDEELGGCVLPDLNEEPYSSISVYDLEDYASDSSDGGKPLSKRENVWGCKRRRTGPNPEIGEPSDVVEVVEHKDGDDDEYSMVQQRSVPSASRETKKRKYTRRGKKGDSRPVLLWNAWEEEQERWIDKNISEDADLDNHGEVMNETAEAPSDLTMPLLRYQKEWLAWALKQESSESRGGILADEMGMGKTIQAIALVLAKREFEERSSEPDQSIPSSSRLLPVIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGANRWKSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLRYHQNYFCGPDAIRTEKQSKQAKKKCSLVTKGKTKVCDGNKMSKGSKKKKEEETDMIMEDTEAVPVRADKSLLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQIIPYSYYLCKDCDCKILDHSSKECSGCIHSSVRHFCWWNKYVATPIQSFGNGDSGRRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRNGVMESNATVEQVCGICHEPVEDVVVTSCEHVFCKACLIDFSASLGQASCPTCSKLLTVDLTSNKDVGDQAYKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRIMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIRRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTESDLRFLFVT	928

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca10g00702	928	MobiDBLite	consensus disorder prediction	136	169	-	-
	Cca10g00702	928	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	668	742	IPR013083	-
	Cca10g00702	928	SUPERFAMILY	RING/U-box	669	720	-	-
	Cca10g00702	928	PANTHER	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	153	925	-	-
	Cca10g00702	928	Gene3D	-	384	596	IPR038718	-
	Cca10g00702	928	SMART	helicmild6	789	872	IPR001650	-
	Cca10g00702	928	ProSiteProfiles	Zinc finger RING-type profile.	674	714	IPR001841	-
	Cca10g00702	928	Gene3D	-	221	358	IPR038718	-
	Cca10g00702	928	MobiDBLite	consensus disorder prediction	37	55	-	-
	Cca10g00702	928	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	576	IPR027417	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00702	Cca-Chr10	7849473	7856812	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00702	137	928	RAD5 or RAD16-like Gene Family	AT1G05120	66.250	0.0	1082

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Cca10g00702		SNF2_N	3.7e-49	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00702	K15083		-	gmx:100798333	1541.94

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca10g00702	10	7849473	7856812	Cca10g00702	10	7849473	7856812	ECH

Showing 1 to 1 of 1 entries