Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00702 ATGGAGCTTCGTTCTCGTCGGCGCCTTTCCAATACTACAGTTTCTGGGAAGGAGGAGCAGCCTGAGGATGATGCTGTTGTGAAAGATGAAACTAATGGCGGGTGCGGTAACAATAAAGATAAAGGTGTTTCTGTTGTATCttcagattcggatatagtttctgatcctgattcaggttctgacttcGAAGATGAAGAATTGGGTGGGTGCGTTCTACCTGACTTGAATGAAGAACCATATTCAAGCATTAGTGTTTATGATTTAGAAGATTATGCTTCTGATTCGTCTGATGGTGGCAAGCCTTTGTCCAAAAGGGAGAATGTGTGGGGGTGCAAACGGAGAAGAACAGGTCCCAACCCAGAAATTGGAGAACCAAGTGATGTGGTTGAAGTGGTGGAACACAAAGATGGTGATGATGATGAATACTCTATGGTTCAGCAGCGATCAGTTCCCTCTGCTTCGAGGGAAACTAAGAAGAGGAAATATACAAGAAGAGGCAAAAAAGGAGATTCTCGGCCAGTGTTGTTGTGGAATGCGTGGGAAGAGGAACAAGAAAGATGGATTGATAAGAATATATCAGAAGATGCTGACTTAGATAATCATGGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGTTCTGAGAGTAGAGGCGGAATACTTGCAGATGAAATGGGAATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTAGCCAAACGTGAATTTGAAGAAAGGAGTTCTGAACCAGATCAATCCATACCAAGTTCATCCAGATTGTTACCTGTGATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATCGCTTTACTTTAAAAGGGAGCACCAAGGTGCTAATTTATCATGGGGCTAATAGATGGAAGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATCACTACATACTCTGTCGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGGTGCCCATATTGTGGAAAATTATTTTTGCCAAGTAAGTTGAGATATCATCAAAACTATTTTTGTGGACCTGATGCTATTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGTGTAGTTTAGTTACTAAAGGGAAGACCAAGGTATGTGACGGTAACAAGATGTCAAAGGGTTCTAAAAAGAAAAAGGAAGAAGAAACGGACATGATTATGGAGGATACAGAGGCTGTCCCTGTACGTGCAGATAAGTCACTTCTGCATGCTGTAAAATGGCAGCGAATTATATTGGATGAGGCGCACTATATAAAATCTAGGCATTGTAACACCGCTAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCGTTAAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAATTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAAGATTCTTGATCATAGCTCTAAAGAATGTTCAGGCTGCATTCACAGTTCTGTGAGGCATTTCTGTTGGTGGAATAAGTATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGTAGAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACTAAAATTGGGAGGGCTGCTGATCTTGCGCTTCCGCCTAGAATTGTTTCATTGAGAAAGGACTGTCTGGATATTAAAGAGCAAGACTATTATGAATCGTTATATAATGAAAGTCAGGCACAATTTAATACATATGTTGAAGCAAATACTCTGATGAATAATTATGCCCATATATTTGACCTCCTCACCCGTCTGCGACAGGCCGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAATGGAGTTATGGAAAGTAATGCTACTGTTGAACAGGTTTGCGGCATTTGCCATGAGCCAGTAGAAGATGTTGTAGTTACCTCTTGTGAGCATGTATTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGGCAAGCATCATGCCCTACGTGCTCTAAATTACTTACTGTTGATTTAACGTCCAACAAGGATGTTGGGGATCAGGCTTACAAAACAACAATTAAGGGATTCAGATCCTCAAGCATTTTGAATAGAATTCGACTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCTTTGAGAGAAGAAATAAGGATCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAATTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTCGGAGATTCACTGATGATCCAGACTGCAAAATTTTTCTCATGAGTTTGAAGGCTGGAGGTGTTGCACTCAATTTGACTGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCTGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGGATTGTGAGGTTTGTCATTGAGAACACAATCGAGGAGAGAATTCTGAAGCTGCAAGAGAAGAAGGAATTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACTGAGTCAGACTTGAGATTTTTATTTGTTACCTAA 2787 0.4055 MELRSRRRLSNTTVSGKEEQPEDDAVVKDETNGGCGNNKDKGVSVVSSDSDIVSDPDSGSDFEDEELGGCVLPDLNEEPYSSISVYDLEDYASDSSDGGKPLSKRENVWGCKRRRTGPNPEIGEPSDVVEVVEHKDGDDDEYSMVQQRSVPSASRETKKRKYTRRGKKGDSRPVLLWNAWEEEQERWIDKNISEDADLDNHGEVMNETAEAPSDLTMPLLRYQKEWLAWALKQESSESRGGILADEMGMGKTIQAIALVLAKREFEERSSEPDQSIPSSSRLLPVIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGANRWKSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLRYHQNYFCGPDAIRTEKQSKQAKKKCSLVTKGKTKVCDGNKMSKGSKKKKEEETDMIMEDTEAVPVRADKSLLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQIIPYSYYLCKDCDCKILDHSSKECSGCIHSSVRHFCWWNKYVATPIQSFGNGDSGRRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRNGVMESNATVEQVCGICHEPVEDVVVTSCEHVFCKACLIDFSASLGQASCPTCSKLLTVDLTSNKDVGDQAYKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRIMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIRRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTESDLRFLFVT 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00702 928 MobiDBLite consensus disorder prediction 136 169 - -
Cca10g00702 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 742 IPR013083 -
Cca10g00702 928 SUPERFAMILY RING/U-box 669 720 - -
Cca10g00702 928 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 153 925 - -
Cca10g00702 928 Gene3D - 384 596 IPR038718 -
Cca10g00702 928 SMART helicmild6 789 872 IPR001650 -
Cca10g00702 928 ProSiteProfiles Zinc finger RING-type profile. 674 714 IPR001841 -
Cca10g00702 928 Gene3D - 221 358 IPR038718 -
Cca10g00702 928 MobiDBLite consensus disorder prediction 37 55 - -
Cca10g00702 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 576 IPR027417 -
Cca10g00702 928 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 754 918 IPR001650 -
Cca10g00702 928 SMART ring_2 674 713 IPR001841 -
Cca10g00702 928 Pfam SNF2-related domain 233 651 IPR000330 GO:0005524|GO:0140658
Cca10g00702 928 ProSitePatterns Zinc finger RING-type signature. 689 698 IPR017907 -
Cca10g00702 928 Pfam Helicase conserved C-terminal domain 758 872 IPR001650 -
Cca10g00702 928 MobiDBLite consensus disorder prediction 1 79 - -
Cca10g00702 928 CDD SF2_C_SNF 756 883 - -
Cca10g00702 928 Gene3D - 598 926 IPR027417 -
Cca10g00702 928 MobiDBLite consensus disorder prediction 56 71 - -
Cca10g00702 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 926 IPR027417 -
Cca10g00702 928 Pfam zinc-RING finger domain 674 715 IPR001841 -
Cca10g00702 928 PANTHER BNAA08G28190D PROTEIN 153 925 - -
Cca10g00702 928 SMART ultradead3 215 522 IPR014001 -
Cca10g00702 928 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 504 IPR014001 -
Cca10g00702 928 CDD DEXDc_SHPRH-like 219 576 - -
Cca10g00702 928 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00702 Cca-Chr10 7849473 7856812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00702 137 928 RAD5 or RAD16-like Gene Family AT1G05120 66.250 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca10g00702 SNF2_N 3.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00702 K15083 - gmx:100798333 1541.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00702 10 7849473 7856812 Cca10g00702 10 7849473 7856812 ECH