Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00700 ATGGAGATGGAGTGGACTAGAGGCTTCATCATAGGGCGTGGCTCATCAGCCACCGTCTACACTGCCACCTCCTCCTACTCCTCCACTGTCGCCGCCGTCAAGTCGGCAGAGCTATCACCAGCAAACTCAGAACAACTTCAGAGAGAACAGAGGATCCTGTCTTCTCTGTTCTCTCCCCACATAGTTACCTACAAAGGGTGTAACATTACAAGAGAAAACAACAACCTATGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGTACCCTCATGCAGGAAAGTCGCCGGCACGGTGGCCGGCTCACTGAGTCAGCAATCGTGCGGTACACACGACAGGTCCTGCAGGGGCTAGAGTACTTGCACGACAAAGGTGTTGTGCATTGCGATATCAAAGGTAGCAACATTTTGATTGGTAACGATGGGGCCAAGATTGGAGACTTTGGATGTGCCAAGTTTGCAAATGAGTCTCCGGTGGCGATCGGCGGCACACCGATGTTCATGGCACCAGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATGTGTGGGCACTTGGGTGCACTGTGGTTGAAATGGCCACTGGGTTTGCACCTTGGCCTAATGTGGAAGACCCTGTCACAGTGTTGTACCGTATTGCATATTCCGATGAGTTACCTAACATTCCTTGTTTTCTGTCTGAGGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAAGAGGAATCCTAACGAGAGATGGAGTTGTAGTCAGCTTCTGAAGCATCCGtttcttggggaattcagttccaatgataaggaaattcaggaaccaaattcatgttctccaacaAGTATTCTTGAGCAGGGCTTTTGGAATTCTATGGAAGAGGCAGAGTCAGAGGTAGAGTGTGTATCTTGCCATTTGGTTCATAAAAATTTTGAGGATTCTCCAAATGGTAGGATCGAAAGGTTAGCTTTGTGTTCAGGGGATCCTCACATTTGGGAATCGGATGGTGAGAATTGGATCACAACTAGGGGCAGTGAAGTAGGGACATTAACTAGTAATGGATTGGATTTGGATGTTAATAATAGAATTAGTGGTTACTTTTGTGATGATCATAAATGTAGGGATGTAAGTGTTGTAGTTGACAGTCTCAATTTTGAGAGAGGCATTTCCAAGATGTTTCTCCCTTCAACATTGGATTTTTTATGA 1191 0.4484 MEMEWTRGFIIGRGSSATVYTATSSYSSTVAAVKSAELSPANSEQLQREQRILSSLFSPHIVTYKGCNITRENNNLWFNLFMEYMPFGTLMQESRRHGGRLTESAIVRYTRQVLQGLEYLHDKGVVHCDIKGSNILIGNDGAKIGDFGCAKFANESPVAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNVEDPVTVLYRIAYSDELPNIPCFLSEEAKDFLGKCFKRNPNERWSCSQLLKHPFLGEFSSNDKEIQEPNSCSPTSILEQGFWNSMEEAESEVECVSCHLVHKNFEDSPNGRIERLALCSGDPHIWESDGENWITTRGSEVGTLTSNGLDLDVNNRISGYFCDDHKCRDVSVVVDSLNFERGISKMFLPSTLDFL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00700 396 PANTHER MAP KINASE KINASE KINASE 3 360 - -
Cca10g00700 396 ProSiteProfiles Protein kinase domain profile. 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00700 396 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Cca10g00700 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cca10g00700 396 Pfam Protein kinase domain 10 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00700 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 360 - -
Cca10g00700 396 CDD STKc_MAPKKK 4 257 - -
Cca10g00700 396 SMART serkin_6 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00700 396 Gene3D Transferase(Phosphotransferase) domain 1 4 312 - -
Cca10g00700 396 SUPERFAMILY Protein kinase-like (PK-like) 6 278 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00700 Cca-Chr10 7843439 7844681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00700 3 348 MAP Kinase Kinase Kinase AT2G32510 49.861 1.65e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca10g00700 Pkinase 9.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00700 K20716 - gmx:100797801 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00700 10 7843439 7844681 Cca10g00700 10 7843439 7844681 ECH
Cca10g00700 10 7843439 7844681 Cca08g02073 08 53715191 53718597 ECH
Cca10g00700 10 7843439 7844681 Cca04g01001 04 10883991 10885467 PCT