Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00698 ATGGATGACACAGTTACCACAAACAAGTCTCCATCATCCCCTCCCAAcaccaccaccaccaccaccaccaccaTCCCCTTCCAAGTCAACCTTGCCTCCGATCAGAAAAGGCCCCACATCGGAGAAATGGATTTCTTTCCTAACAAGACCAACAATGAAaacaacaacaacaacaacaacaacaaTTTTGCCTCTGCCTCCACCTCTGCACCTCCCTCACTTGACCACCTTCATCACACACATGATCATTCCTCCACTTCTTCTATCTTGGAATTGAAAGTAAACACCGGTTTGAATCTTCTTACCACCAACACCAGCAGTGATCAATCCATGGTCGAAGATGAGATATCTCCTAATTCAGAAGACAGAAGAGCCAAGAGTGAGATGGTTCTTCTTCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATCGGCTGAGGAACATGCTTGATCAGGTTAACAACAATTACAATGCCTTGCAGATGCATGTGGTGAGTTTGATGCaggagcagaagggcgaggaggaggatgaggaACACCAACAAAAACAAGTGTTTGATGGAAAACTAGAAGAGGAGAAACAAATTGGAAATGGTGGAGCCTTGGTGCCAAGGCAAAGTCAGGATCGGTCAAAGTCACCAACAAATAATATGGAGGTGGCATCCAAAGAATTTGGCACTTGTAGGAAGAATGGGAGTGCTAGTGATGAAGGACCAGTGTTTGAAGACAAGAAGGAACTTAGTAGGGGTATTGAGAGAGAGGATAGTCCCTCAGATCAAGGGGTGCCTGCTAATAACAATGTTCCAAAGTTCAGTCCTCCAAGAAATGCTGATCAAGCTGAGGCCACCATGAGGAAGGCTAGAGTTTCTGTGAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTCGTGCATACTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAGCAATACTAATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCGGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTTCTCTCAGGGTCAATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGAACACTCCTTCCTTGCTCATCTAGCATGGCCACTATCTCAGCATCAGCTCCATTTCCCACTGTTACATTGGACTTGACTCAGTCCCCAAACCCATTACAGTTCCCAAAGCCCCCAAGCCAATTCCAAATCCCCTTCCCCGGTGTGCCTCAGAACTTTGCCAATTCACCAGCCTCATTGCTGCCTCAGATATTTGGTCAGGCACTGTATAACCAATCCAAGTTTTCTGGCCTCCAAATGTCTCAAGATATTGCAGACACTTCCCAATTGAGTAATCAATCTCAACGACCACCACCACACCTTGCAGACACAGTTAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACTGCAGCTTTGGCAGCAGCCATCACTTCCATTATTGGGGGTGCACAGCCAAACAACAACACAAGtactaataataataataatGGCTCCACATCGACCAACAACAGCAATGGCAATATTAAACCGAGCAACAACAAATAA 1683 0.4397 MDDTVTTNKSPSSPPNTTTTTTTTIPFQVNLASDQKRPHIGEMDFFPNKTNNENNNNNNNNNFASASTSAPPSLDHLHHTHDHSSTSSILELKVNTGLNLLTTNTSSDQSMVEDEISPNSEDRRAKSEMVLLQAELERMKVENHRLRNMLDQVNNNYNALQMHVVSLMQEQKGEEEDEEHQQKQVFDGKLEEEKQIGNGGALVPRQSQDRSKSPTNNMEVASKEFGTCRKNGSASDEGPVFEDKKELSRGIEREDSPSDQGVPANNNVPKFSPPRNADQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRAILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPSQFQIPFPGVPQNFANSPASLLPQIFGQALYNQSKFSGLQMSQDIADTSQLSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPNNNTSTNNNNNGSTSTNNSNGNIKPSNNK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00698 560 Gene3D WRKY domain 285 362 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca10g00698 560 MobiDBLite consensus disorder prediction 201 222 - -
Cca10g00698 560 MobiDBLite consensus disorder prediction 528 560 - -
Cca10g00698 560 ProSiteProfiles WRKY domain profile. 295 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca10g00698 560 MobiDBLite consensus disorder prediction 236 256 - -
Cca10g00698 560 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 552 IPR044810 GO:0003700
Cca10g00698 560 SMART WRKY_cls 300 360 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca10g00698 560 MobiDBLite consensus disorder prediction 1 82 - -
Cca10g00698 560 MobiDBLite consensus disorder prediction 259 273 - -
Cca10g00698 560 PANTHER OS05G0567200 PROTEIN 22 552 - -
Cca10g00698 560 SUPERFAMILY WRKY DNA-binding domain 293 361 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca10g00698 560 MobiDBLite consensus disorder prediction 196 294 - -
Cca10g00698 560 MobiDBLite consensus disorder prediction 1 31 - -
Cca10g00698 560 Pfam WRKY DNA -binding domain 302 359 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca10g00698 560 Coils Coil 122 170 - -
Cca10g00698 560 MobiDBLite consensus disorder prediction 47 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00698 Cca-Chr10 7821026 7823799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00698 27 540 WRKY Transcription Factor Family AT1G62300 49.906 1.74e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca10g00698 WRKY 2.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00698 - - gmx:100127384 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00698 10 7821026 7823799 Cca10g00698 10 7821026 7823799 ECH
Cca10g00698 10 7821026 7823799 Cca08g02071 08 53686395 53689032 ECH
Cca10g00698 10 7821026 7823799 Cca04g01000 04 10871778 10874870 PCT