Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00685 ATGGAGGGTGCTGTGGTGGAAGAGAATAATATTGTTAATGATGATAACACTACTAATAAGTCTGAGGCGCATTTGACTTCCGCCGCTGCTTTTGTGGAGGGTGGGATTCAGGACGCGTGTGATGATGCTTGCAGCATATGCCTTGAAGCTTTCTGTGACAGTGATCCTTCCACGGTGACTAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCTCAGTGTCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAACTGCTTGAGGCAGTGGAAAGAGAGAGAAACTTTAGGTTCAATCCATCTAGAAATGCCACGATATTTCATCATCCAGCACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGACGCAGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCAGCAGCAATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACATTTTTTGGTTTTTTCAACTCATCCTAATTCACCTCCCAGGGCTCCTGCTTCTTCCTCTCCATCTCAGAGGGGGGATGATGAACAACCGACTCCAACAATTGCTGTTGCGAATATGTCTCCAACTCCTGCAACTGGAGAAGAATCATCACAGCTGACTTTAGTTCCTTCTGTTCAAGTAGATCAGGTTTCAGGGTCTGGATCTGGATCTACTGCTCTTGCTACAGATCATCAGGGATCATCTTACAACAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGCCAAGACAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGAATCTCTGAAATCTAAACTGAGTGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGTACAAGAGGGTGGAAGGAGAGATGGTTCTCCCGTAACCCCTCCATGTCTGATATTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTATGTCACGCATGATGGAACGTCTGGAGACCAGAGAGGGTAATAGAAACAACAACAGTTCAGCTCCAACTAATTTAGAGGATGGTTCAGTTCAGGGATCCAATGATCAGCCTTTAACAGGCACAGAAGGGGAAGGTCTTTTGAGAGACAATAACACAAAAGCTTCTTGCGCAGCAGGTTCTAGTTCAAATTAA 1206 0.4552 MEGAVVEENNIVNDDNTTNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPALGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPRAPASSSPSQRGDDEQPTPTIAVANMSPTPATGEESSQLTLVPSVQVDQVSGSGSGSTALATDHQGSSYNNRRSPNQSSPSSQDRAGPSEFQSFSESLKSKLSAVSTRYKESISKSTRGWKERWFSRNPSMSDIGSEVRREVNAGIATMSRMMERLETREGNRNNNSSAPTNLEDGSVQGSNDQPLTGTEGEGLLRDNNTKASCAAGSSSN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00685 401 MobiDBLite consensus disorder prediction 344 401 - -
Cca10g00685 401 SUPERFAMILY RING/U-box 37 92 - -
Cca10g00685 401 Pfam Ring finger domain 43 84 IPR001841 -
Cca10g00685 401 MobiDBLite consensus disorder prediction 352 401 - -
Cca10g00685 401 SMART ring_2 44 84 IPR001841 -
Cca10g00685 401 ProSiteProfiles Zinc finger RING-type profile. 44 84 IPR001841 -
Cca10g00685 401 MobiDBLite consensus disorder prediction 160 285 - -
Cca10g00685 401 MobiDBLite consensus disorder prediction 188 285 - -
Cca10g00685 401 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 401 - -
Cca10g00685 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 93 IPR013083 -
Cca10g00685 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 17 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00685 Cca-Chr10 7644823 7650597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00685 41 84 C3H Transcription Factor Family AT5G15790 50.000 6.03e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00685 K19043 - gmx:100780275 676.396