Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00682 ATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTCAGCAATTTTCTACCGTTGCTAAGTTACAGAAACAACACCTAAGCGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAATGCAAATCATTTGAGCCCGTAGACCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGCTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGATTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGTGATGGTACTCAAAAGTCTAACGGATTTTACTGA 411 0.4282 MGASLQTFPSQDTQQFSTVAKLQKQHLSVQEACSKELGSSSKCKSFEPVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00682 136 Gene3D High mobility group box domain 51 109 IPR036910 -
Cca10g00682 136 MobiDBLite consensus disorder prediction 40 68 - -
Cca10g00682 136 PANTHER PROTEIN YABBY 6-RELATED 1 136 IPR006780 GO:0007275
Cca10g00682 136 Pfam YABBY protein 15 113 IPR006780 GO:0007275
Cca10g00682 136 MobiDBLite consensus disorder prediction 45 62 - -
Cca10g00682 136 SUPERFAMILY HMG-box 57 106 IPR036910 -
Cca10g00682 136 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00682 Cca-Chr10 7599133 7608153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00682 35 136 C2C2-YABBY Transcription Factor Family AT1G08465 76.190 3.91e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca10g00682 YABBY 1.1e-41 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00682 K25796 - gmx:100785458 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00682 10 7599133 7608153 Cca04g00988 04 10695036 10702611 PCT