Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00679 ATGGATCCCTTCATCCACAAGCTCCGTCGCCACCTTCTAGCATGGCTTCACCGATCTCGCTCCGGTGCGGTGTTTTTTGTGAGGAGAATTTCGTACAAGGACGTTAGAAGAGCAACGGACGGTTTCCGCAGAATCGTTTATAGCAATTCTGAAGTTTCTGCGTATGCTGCCAAGTTTGGAGACGGCGGCGGTGTGTGTTTGGTGAGAGAAGTGAAAGGTTTCAATGAAGGAAATGACAATTTTCACAGGCACGTGCAATTCTTGGGGCGCTTGCGCCATCGCCATCTTCTCTCGCTCAGAGGCTTTTCTGTCGGACGCAATCACAAGAGATTGCTCATATTTGACAACATAGAAAATGGAAGCTTGAAGGAGCATCTAAATGACCCTTTGAAGACTCCCTTAAATTGGAGGACGAGGTTACAGATAGCTAATGGCGTTCTGGCTGCACTGGAATACTTGTTTCTCTTCAGTGAACCACCAGTGTGTCATGTGTCTATCACCTCGGGCAATATTATGTTAGATGAGAACTTCACAGCTAAACTATCCGACTTTGGCCTTCTTACATCTGGTGGAGATTCTGTTATGATGCCATATTCAGAAGATTATATGAAGCAGAAAAGTTGTAAGATTATCTTCCAACTTGGAGTGCTCATACTAGAATTGGTCACCGGTCAGTCTTCAGAGATGGAAGGTTCTGATTTAATTGAATGGATCCAAGAATCCCGATTTTACAATTCCATAGATAAGATGATAGACCCTGATCTTGGTAACAATTACGACTGTACGGAGCTTAAAAGTCTTCTGGCAGTGGCAAAATTGTGTATCAAATCATGGGACAAGCCTCCATTTACAATTCCACAGTTATTCCGGTATCTCCAAAAGAAGATTGATATTACCCATGACTAG 906 0.436 MDPFIHKLRRHLLAWLHRSRSGAVFFVRRISYKDVRRATDGFRRIVYSNSEVSAYAAKFGDGGGVCLVREVKGFNEGNDNFHRHVQFLGRLRHRHLLSLRGFSVGRNHKRLLIFDNIENGSLKEHLNDPLKTPLNWRTRLQIANGVLAALEYLFLFSEPPVCHVSITSGNIMLDENFTAKLSDFGLLTSGGDSVMMPYSEDYMKQKSCKIIFQLGVLILELVTGQSSEMEGSDLIEWIQESRFYNSIDKMIDPDLGNNYDCTELKSLLAVAKLCIKSWDKPPFTIPQLFRYLQKKIDITHD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00679 301 Gene3D Transferase(Phosphotransferase) domain 1 117 299 - -
Cca10g00679 301 Gene3D Phosphorylase Kinase; domain 1 15 115 - -
Cca10g00679 301 ProSiteProfiles Protein kinase domain profile. 32 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00679 301 PANTHER OS01G0253100 PROTEIN 1 297 IPR045271 GO:0004714|GO:0006468
Cca10g00679 301 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 297 - -
Cca10g00679 301 SUPERFAMILY Protein kinase-like (PK-like) 24 267 IPR011009 -
Cca10g00679 301 Pfam Protein tyrosine and serine/threonine kinase 78 190 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00679 Cca-Chr10 7553248 7556581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00679 22 300 Receptor kinase-like Gene Family AT3G19300 34.768 9.42e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Cca10g00679 PK_Tyr_Ser-Thr 2.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00679 - - gmx:100791979 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00679 10 7553248 7556581 Cca10g00679 10 7553248 7556581 ECH