Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00678 ATGGGTGTATCTGGGAGGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGCCTCTTCAGAGAAGGGTGGAAATGTTGGCAAGTTTCATCATCAGAGAAGGCATGTTGTTGAACTTGATAATGGTAAACATCCAACTGAATTGGAGAATGATGCTACTCCACCTATTGGAGATGACAACGGCCATGCAAACCTTGACACCCATGATTCATCTTGTTCTTCACAACAAGCACACGATGCTTCAGATAATCAACAAATGAGAGAAGAATGGGCTGCAATATGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCTCTGGTGAGAGGCCATGCAGTGAGAAAACAAGCTGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTCCAAGCCCGTGTTCGGGCAAGGCGTGTTTGCATGTCATTGGAAACTCAATCAACACAACAGAAACTTCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAAATATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGACTGTTTCCTCTGGATTTGAACCAGATAAAAATAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCATGGGAGAATCGCTTCGTTGACATTAATATGAAGGATGGAGTAACGGTACATGAAAATGGAGCTAAGGATGATATAAATGGAACCACACCTCAGTTGGGCTCTGCTAACAGGAAACCGTCCTCATCAAACACTCATCTAAACCCGACAAGTCAGGGAATGGGTCCCACTATTTCTGATGGCTGTGATTCTTCACCTAGTAGGTCTGCAGGTTTGCTAGAGTCATCAAACACACAGCCTGTTAAGCCAACTTCTAAGGCAAATGGCGAAAATACTGTTGAAGAAGTTAACTCAAAACCTAGAAATGGGTCAAGATCTCAAAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGGCAAAAAACGATTATCTCTGCCTAACAATGGGGGTGGTGCTGGATCTCAAACAGTCAGACACCCTATTAGCACCAATGTGAAAGGGACGCTAAGCACGCAAAAGTCTAGTAGAGATAAACCTAAGCTCAATGGAAGAAGGGATGCGAATACAAAATCAGTTCCATAG 1287 0.4429 MGVSGRWIKALVGLKKSEKPASSEKGGNVGKFHHQRRHVVELDNGKHPTELENDATPPIGDDNGHANLDTHDSSCSSQQAHDASDNQQMREEWAAICIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMSLETQSTQQKLQQNLANEARVREIEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALSHQWQAGSRQQTVSSGFEPDKNSWGWNWLERWMAVRPWENRFVDINMKDGVTVHENGAKDDINGTTPQLGSANRKPSSSNTHLNPTSQGMGPTISDGCDSSPSRSAGLLESSNTQPVKPTSKANGENTVEEVNSKPRNGSRSQSNPKERTSQADKQGKKRLSLPNNGGGAGSQTVRHPISTNVKGTLSTQKSSRDKPKLNGRRDANTKSVP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00678 428 SMART iq_5 113 134 IPR000048 GO:0005515
Cca10g00678 428 SMART iq_5 90 112 IPR000048 GO:0005515
Cca10g00678 428 MobiDBLite consensus disorder prediction 42 86 - -
Cca10g00678 428 MobiDBLite consensus disorder prediction 276 367 - -
Cca10g00678 428 MobiDBLite consensus disorder prediction 69 84 - -
Cca10g00678 428 Gene3D - 91 133 - -
Cca10g00678 428 MobiDBLite consensus disorder prediction 16 35 - -
Cca10g00678 428 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Cca10g00678 428 MobiDBLite consensus disorder prediction 273 428 - -
Cca10g00678 428 PANTHER IQ-DOMAIN 5-RELATED 2 390 - -
Cca10g00678 428 PANTHER IQ-DOMAIN 5-RELATED 2 390 - -
Cca10g00678 428 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Cca10g00678 428 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Cca10g00678 428 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Cca10g00678 428 MobiDBLite consensus disorder prediction 383 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00678 Cca-Chr10 7541924 7549054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00678 1 420 IQD Protein Family AT3G22190 53.721 6.97e-122 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00678 - - gmx:100819346 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00678 10 7541924 7549054 Cca10g00678 10 7541924 7549054 ECH