Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00675 ATGGATGTTGATTCCTCCATGGTGCCGGAGGCCGATCACGATCCGGCCGTGCAGAACCACGCCGCCGCCGCTCCTGCGCCGGCTGCGACGGAGGGAGAGCATCTGGCGGAGCCACCGTCGTCCGGAGGCGGATCTCCGGCGCAGCCTCAGGTGCAGCAACAGGCGGCGCCTGCTTCGGCGCCGCAGAGTCCGGTGGTTGGACCGAGGCTGGCGCCATCTTACACTGTGGTGAATGCAATTATGGATAAGAAGGAGGACGGACCGGGGCCGAGGTGCGGCCACACGTTGACGGCGGTTGCGGCGGTCGGAGAGGAGGGGACGCCGGGGTACATTGGTCCTCGGCTAATTTTGTTCGGTGGTGCCACTGCTCTTGAAGGGAATTCCGCGGCTTCAGGGACTCCTTCATCTGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACAGCTGATGTCCACTGTTATGATGTATTGACTAATAAATGGTCTAGGATAACTCCCTTTGGAGAACCTCCAACTCCAAGGGCTGCACATGTGGCGACTGCTGTGGGAACTATGGTGGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCATGTTCTTGATCTCACTCAGCAATGGCCACGCTGGCATAGAGTGTCTGTTCAGGGCCCTGGACCTGGGCCACGCTATGGACATGTAATGGCTTTGGTGGGGCAGAGGTATCTAATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACAGCTGCCAAGCCTTATGAATGGCGCAAGTTAGAGCCAGAAGGAGAGGGCCCACCACCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGACTTCTTCTGCTTTGTGGAGGGAGGGATGCCAGTAGTGTTCCATTGGCAAGTGCATACGGACTTGCTAAACATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCTGGTGTTTCACCATCACCAAGATATCAGCATGCAGCGGTGTTTGTTAATGCAAGGCTCCACGTGTCTGGTGGGGCTCTTGGTGGAGGACGGATGGTTGAAGACTCATCAAGCGTTGCAGTATTGGACACCGCCGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGCCCAAGAACTGGTAGATACAGTGCTGATGCAGCAGGAGGAGATGCAGCAGTTGAGTTGACTAGGCGTTGTAGGCATGCAGCTGCCGCTGTTGGTGACCTAATTTTTATTTATGGTGGTTTACGTGGGGGAATCTTGCTAGATGACCTACTTGTTGCTGAAGATCTtgctgctgctgaaacaacagctgctgcttcacatgctgctgctgcagcagctgcttctAATGTACAAGCAGGGCGCTTACCTGGACGATATGGATTCATTGATGATAGATCAAGGCAAACAATGCCTGAGGCTGCTGCTGATGGTTCTGTTGTTTTGGGAAGTCCAGTTGCACCCCCAATGAATGGTGACATTTATAACGATATCAGCACTGAAAATGCCATGCTTCCAGTACCTCGGCGAACTGCTAAAGGAGTTGAGTATTTAGTTGAAGCATCAGCTGCAGAAGCGGAAGCAATCAGTGCTGCACTGGCTGCTGCCAAGGCACGGCAAGAGAATGGAGAAGTTGAATTGCCTGACAGAGACCGTGGGGCGGAGGCGACCCCAAGTGGGAAACAAACATCTTCCTTGATTAAGCCTGAATCTGATTCTGCAGGTTCAAATAATGTTACTCCTGGTGGAGTCCGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGAGCATTGGGTGGCATGGTTAGACAGCTTTCAATTGATCAATTTGAAAATGAAGGCAGGCGAGTTAGTTATGGGACTCCAGAAAATGCAACTGCTGCCAGGAAATTATTAGATCGGCAGATGTCTATCAATAGTGTGCCAAAAAAGGTCATTGCGCACCTCTTAAAGCCTCGTGGATGGAAGCCACCAGTACGCCGGCAGTTTTTCTTAGATTGTAATGAAATTGCTGATCTTTGTGACAGTGCTGAGCGGATATTTTCAAGTGAACCAACTGTCTTACAACTTAGGGCACCAATTAAAATATTTGGTGATCTACATGGACAGTTTGGTGATCTCATGCGCCTTTTTGATGAGTACGGTGCACCATCAACTGCTGGTGACATTGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATCGGGGACAGCACAGCTTGGAAACTATAACCCTTCTTCTTGCTCTGAAGGTTGAGTATCCCAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTCTTTGGTTTCCGAATTGAGTGCATAGAGAGGATGGGTGAGAGAGACGGAATTTGGACATGGCATCGGATAAACAAGCTGTTTAATTGGCTTCCTCTAGCAGCTTTAATTGAGAAAAAAATTATTTGCATGCATGGCGGTATTGGTCGTTCAATAAATCATGTAGAACAGATTGAAAACATTCAGCGTCCAATTCCAATGGAAGCAGGATCAATTGTGCTTATGGATCTATTGTGGTCTGACCCTACAGAGAATGACAGCGTGGAAGGTTTGCGGCCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGGCCTGATCGGGTCATGGAATTTTGCAACAACAATGATCTTCAGCTGATTGTTCGTGCACATGAATGTGTGATGGATGGATTTGAGCGTTTTGCCCAGGGACATTTGATCACGCTGTTTTCAGCTACAAATTATTGTGGTACCGCAAATAATGCTGGGGCAATATTAGTTTTGGGTAGAGACCTTGTTGTGGTTCCTAAACTGATTCATCCATTACCACCAGCAATATCTTCACCAGAAACGTCACCCGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACACCAACTAGAGGTCGACCCCCAGGAACAAATGACCGAGGTTCGCTAGCTTGGATATAG 3024 0.4831 MDVDSSMVPEADHDPAVQNHAAAAPAPAATEGEHLAEPPSSGGGSPAQPQVQQQAAPASAPQSPVVGPRLAPSYTVVNAIMDKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDASSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGILLDDLLVAEDLAAAETTAAASHAAAAAAASNVQAGRLPGRYGFIDDRSRQTMPEAAADGSVVLGSPVAPPMNGDIYNDISTENAMLPVPRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEVELPDRDRGAEATPSGKQTSSLIKPESDSAGSNNVTPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPTVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINKLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPPGTNDRGSLAWI 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00675 1007 Gene3D - 73 199 IPR015915 GO:0005515
Cca10g00675 1007 SUPERFAMILY Kelch motif 146 435 IPR015915 GO:0005515
Cca10g00675 1007 MobiDBLite consensus disorder prediction 1 69 - -
Cca10g00675 1007 CDD MPP_Bsu1_C 656 958 IPR041758 -
Cca10g00675 1007 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1001 - -
Cca10g00675 1007 SUPERFAMILY Metallo-dependent phosphatases 661 967 IPR029052 -
Cca10g00675 1007 PIRSF STPPP_BSU1 41 1007 IPR012391 GO:0004721|GO:0009742
Cca10g00675 1007 PRINTS Serine/threonine phosphatase family signature 704 731 IPR006186 GO:0016787
Cca10g00675 1007 PRINTS Serine/threonine phosphatase family signature 739 766 IPR006186 GO:0016787
Cca10g00675 1007 PRINTS Serine/threonine phosphatase family signature 772 796 IPR006186 GO:0016787
Cca10g00675 1007 PRINTS Serine/threonine phosphatase family signature 810 836 IPR006186 GO:0016787
Cca10g00675 1007 PRINTS Serine/threonine phosphatase family signature 900 920 IPR006186 GO:0016787
Cca10g00675 1007 PRINTS Serine/threonine phosphatase family signature 922 938 IPR006186 GO:0016787
Cca10g00675 1007 Gene3D - 212 447 IPR015915 GO:0005515
Cca10g00675 1007 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 1001 - -
Cca10g00675 1007 MobiDBLite consensus disorder prediction 982 1007 - -
Cca10g00675 1007 MobiDBLite consensus disorder prediction 550 564 - -
Cca10g00675 1007 Gene3D - 640 978 IPR029052 -
Cca10g00675 1007 MobiDBLite consensus disorder prediction 565 588 - -
Cca10g00675 1007 MobiDBLite consensus disorder prediction 548 590 - -
Cca10g00675 1007 Pfam Kelch motif 332 378 IPR011498 GO:0005515
Cca10g00675 1007 SMART pp2a_7 676 960 IPR006186 GO:0016787
Cca10g00675 1007 MobiDBLite consensus disorder prediction 43 60 - -
Cca10g00675 1007 Pfam Galactose oxidase, central domain 226 279 - -
Cca10g00675 1007 ProSitePatterns Serine/threonine specific protein phosphatases signature. 773 778 IPR006186 GO:0016787
Cca10g00675 1007 Pfam Calcineurin-like phosphoesterase 704 911 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00675 Cca-Chr10 7474250 7486334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00675 668 903 Calmodulin-binding Proteins AT5G63870 29.412 4.64e-27 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00675 10 7474250 7486334 Cca10g00675 10 7474250 7486334 ECH
Cca10g00675 10 7474250 7486334 Cca04g00981 04 10601547 10616353 ECH
Cca10g00675 10 7474250 7486334 Cca04g00981 04 10601547 10616353 PCT