Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00670 ATGGATGAAATTGAAATCCCTGCTCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAGAGATCCTGTCACGGTTTGCACAGGAATCACTTATGATAGAGAAAACATAGAAAGATGGTTATTTTCATGCAAGAACAACACTTGCCCGGTTACAAAGCAATGCTTGTTAGACCATGATCTCACTCCAAACCACACTCTAAGAAGGTTGATCCAAGCTTGGTGCACCCTCAATGCCTCACTTGGAATTGAACGCATTCCAACTCCAAAGTCACCAATCGACAGAACTCAGATTGTGAAGCTCATATCCGAAGCAAAGAGGATCCCTGAGAAGCAACTCAAGTGCCTCACAAGGCTTAGATCCATTGCCTTTGAGGGCCACAGAAACAAAACCTGTTTGGAGTCTGCAGGAGTGATAGAATTCTTGGCCTCAACCATGAAGAACAACATCACACAAGAAAACTCAATCGTTTTAAGTGAAGCAGCAATAGAAGTTTTGTTTCACCTCAATCTCTCCGAGGCTAAGCTTAAAGCTCTTGTAAACAACGAGGGCATGCAGTTTGTTGAGTCATTGTTTCATGTGTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCTACCATGTTACTGAGGTCAGCATTTGAGGTTGCTGATCCAATCCAATTGATCAGTGTGAAAACTTTGTTGTTTGTGGAAATCATGCGTGTGCTGCGTGATAAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTTATTGTGGAGCTTTTCCCGTGGGGAAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTTGATCCTCATTGAGCTACTTCTTGATGCATCAGAAAGAAGGGCGTGTGAACTCATCTTGATAGCGTTGGACCAACTTTGTGGCTGTGCAGAAGGGCGTGCTGAGTTGTTGAATCATGCTGCAGGAGTAGCCATTGTGTCAAAGAAAATTCTAAGGGTTTCTCACGTGGCTAGTGACAGAGGGGTTAGGATTTTGGCCTCTATTTGTAGGTATTCTGCCAATGCTAGAGTGCTTCACGAAATGTTGCAGGTTGGTGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTTAATTGCGGTTTCAAGACTAAGGAGAGAGCCAAGGAGATACTCAAATTGCACTCTGCAGTTTGGAAGAATTCCCCTTGTATTCCTGTACCTTTGTTATCTTCTTATCCATGA 1212 0.4381 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLDHDLTPNHTLRRLIQAWCTLNASLGIERIPTPKSPIDRTQIVKLISEAKRIPEKQLKCLTRLRSIAFEGHRNKTCLESAGVIEFLASTMKNNITQENSIVLSEAAIEVLFHLNLSEAKLKALVNNEGMQFVESLFHVLRLGNYQSRAYATMLLRSAFEVADPIQLISVKTLLFVEIMRVLRDKISQQASKAALKLIVELFPWGRNRIKGVEGGAVLILIELLLDASERRACELILIALDQLCGCAEGRAELLNHAAGVAIVSKKILRVSHVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCGFKTKERAKEILKLHSAVWKNSPCIPVPLLSSYP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00670 403 Gene3D - 95 388 IPR011989 -
Cca10g00670 403 PANTHER OS11G0573500 PROTEIN 1 403 - -
Cca10g00670 403 SUPERFAMILY RING/U-box 3 77 - -
Cca10g00670 403 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Cca10g00670 403 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Cca10g00670 403 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Cca10g00670 403 SUPERFAMILY ARM repeat 107 377 IPR016024 -
Cca10g00670 403 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Cca10g00670 403 CDD RING-Ubox_PUB 10 53 IPR045210 -
Cca10g00670 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00670 Cca-Chr10 7410870 7412484 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00670 2 403 U-box Gene Family AT2G35930 56.158 9.14e-164 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00670 - - gmx:100778012 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00670 10 7410870 7412484 Cca10g00670 10 7410870 7412484 ECH
Cca10g00670 10 7410870 7412484 Cca04g00979 04 10556395 10564769 PCT