Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00669 ATGGCTTCAGCGGGAGTACCGGAAGCTATGGTGCACGTGATCACAAAGAGCTTCAAGCAAGGTAAAGCCACGTCGTGTTGTTATCTCAAAGAGCCTCTCAGAATTCTTCTTTTGCTTTGGAACACTTCCAACATGGTTGACAACAACAAAATGAAGCGCTTGGTTGGTGAAAACCTCGACTTTCTCGACTCCTTGACTTGGGTTTTGCAACTTCAAACCAAGAACAACGTCAAGGTAACAAACGAAGCAATGCCTGTGATGAAATTGGTTATTGAAGCAAAAGACTCAACCCCTTTAGGGAACTTAAAGCTTGAATTCTTCAAAGTGGTTGTAAGTGTGATGAAAAATAGAGAACTCTCTCAGCATGCTATTAAATCCGCATTGCATGTGCTCATAGAAACGTGTCCTTTGGGGAGAAACCGAACGAAGATAGTGGAATCAGGTGCAGTGGTGGAACTCATTGAGCTTGCACTTGAAAAACCAGAAAAGAATGTGACAGAACTCATATTCATCCTTCTGGCACATCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTGTGCAGCACGCTGCAAGCATTGCTGTGGTTTCCAAAAGGATCCTCAGGGTTTCTCCAACGGTTGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAATTCTCAGCGTCAAATGAGGTTGTGCAAGAGATGTTAAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAAGATAAGGCAAGAGGGGTACTTAGGTTACACTCCAAAACATGGAATAATTCTCCTTGTATTCAAGTATACTTGTTAACCAGGTTCCAAAGGTGA 852 0.4261 MASAGVPEAMVHVITKSFKQGKATSCCYLKEPLRILLLLWNTSNMVDNNKMKRLVGENLDFLDSLTWVLQLQTKNNVKVTNEAMPVMKLVIEAKDSTPLGNLKLEFFKVVVSVMKNRELSQHAIKSALHVLIETCPLGRNRTKIVESGAVVELIELALEKPEKNVTELIFILLAHLCSCADGREQFVQHAASIAVVSKRILRVSPTVDDRALHIFSLISKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKDKARGVLRLHSKTWNNSPCIQVYLLTRFQR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00669 283 Gene3D - 1 271 IPR011989 -
Cca10g00669 283 SUPERFAMILY ARM repeat 76 256 IPR016024 -
Cca10g00669 283 PANTHER OS12G0161100 PROTEIN 1 280 - -
Cca10g00669 283 PANTHER WDSAM1 PROTEIN 1 280 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00669 Cca-Chr10 7396158 7397009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00669 1 273 U-box Gene Family AT2G35930 36.594 1.25e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00669 - - gmx:100778547 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00669 10 7396158 7397009 Cca10g00669 10 7396158 7397009 ECH
Cca10g00669 10 7396158 7397009 Cca04g00978 04 10529538 10530964 PCT