Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00668 ATGACAGAAATTGAAATTCCTCAGTTTTTCGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCCGTGACAACCGTTACGGGCATAACATACGAAAGAGAAAGCATCGAACAGTGGTTGCTAAAGGCTAAAGATTGCACGTGTCCCATTACAAAACAACCATTGCCAAGAAACTCAGAGTTCTTAACCCCAAACCACACTCTTCGGAGGCTAATCCAAGCTTGGTGTTCAGCCAACGAAGCAAACGGGGTTGACCAAATTCCAACTCCAAAATCTCCTCTCAGTAATTTCCACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCGGAACACCACTAG 339 0.4543 MTEIEIPQFFACPISLQIMKDPVTTVTGITYERESIEQWLLKAKDCTCPITKQPLPRNSEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNFHVEKLVKDLEVPEHH 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00668 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Cca10g00668 112 SUPERFAMILY RING/U-box 3 85 - -
Cca10g00668 112 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Cca10g00668 112 PANTHER WDSAM1 PROTEIN 3 107 IPR045185 GO:0061630
Cca10g00668 112 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Cca10g00668 112 CDD RING-Ubox_PUB 10 53 IPR045210 -
Cca10g00668 112 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Cca10g00668 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00668 Cca-Chr10 7388351 7388689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00668 3 105 U-box Gene Family AT3G52450 60.194 5.02e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00668 - - gmx:100787419 210.305