Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00667 ATGCTAGCTTCCATCAATCATCACTTTTCCTTAAACAATCATATTCCGGTGTCACTGAGAGAAGAAGAACGAAACATGGCGACGTACTTTCATGGAAGCGCTTCTGAAATTCAACCTTCTGCGGATGGCTTGCAAACGCTTTACCTTATGAACCCGAGTTACGTGCCCTACCCCGACGCGCCGCACCACCCAACGCTCCTCGTCAATCCCAACGCGCTCGGACACGCGAGTCTCCCCCACGCGCCGCCAGTGTCGCCTAGTCAGCAACAGCAGCACCACGTGATTCACGGCGTCACCAACATCCTCGGATCCGCCAGCTCAGAGGACCACACGCGACCGTCGCTGTTCGGGGAAAATATCGCCGCCTTCCACGGCTTCTCCGCCGCCCCTCGCGTTCAGTATAACCTGTGGGGCTCGGTGGCTGATCAACCGGCGACGCCTTCGAGCAGCTCCGGCGGCGGCGGATTCCGGCGGCCGAGTCAGCAGGGGTTGTCGCTCAGCCTCTCGTCACAGCAAACGGCGTATAGAACGGTTTCCGGCGAGATTGACGTCACCGGCCACGGCCTCGTCGGCGGAATTGGAAACTCTCCGGCGTCGGCGTCGGCGTCGACCGGAGTTATTTTGGGGTCGAAGTATTTGAAATCCGCGCAGGAGCTTCTGGAAGAAGTTGTTAACGTGGGAAAGGGAATCTACAAAGAGGAAAAATTCGCAGAGAAGAAAGCGAATAGAGAATCTACAAATTCTGGGGCAGGTGGTGGTGACGGTTCAAGTGGTGGAGGAGAAAACAGTGCAGGAAAACAAGTGGTTGAACTCAGCACTGCTCAGAGGCAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCACCATGCTCGATGAGGTGGAACAAAGGTACAGGCAGTATCACCACCAAATGCAAATTGTAGTATCATCATTTGAGCAGGCAGCGGGTTATGGGGCGGCAAAGTGTTACACTGCTCTTGCCCTAAAGACTATCTCGAAGCAATTCCGATGCCTTAAAGATGCAATCTCTGCACAAATAAAAGCAACGAGTAAGACATTGGGTGAAGATGATTGCTTAGGAGTTAAAGTGGAAGGGTCGAGGCTTAGGTTTGTTGATCACCATCTTCGCCAACAAAGGGCACTGCAACAGCTTGGAATGATTCAGCCCAATGCATGGAGGCCACAGAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCAAAGGACTCGGATAAAGTTATGCTTGCTAAACAAACTGGACTTGCTAGGAGCCAGGTCTCAAACTGGTTCATTAATGCCCGAGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATAAAGGATCATGAACAAACAAATGGTTCAGAAAACACCAGATCAAAAGAATCGAACAAAGAGATGGGTTCAAACGCAAATGTTGCACCAGAATCTAGTGCCATTAAACTCGATCATCTCCAATCAAAGCAAGAAAGCTTCAACAACCAAAACACTTCTCCAACCGAGTTCTCAACAAACTCTTCCGTGGGAGGATCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATGTTCTGACATGCAAAGAAGTCCAAACAAACCAAGAAGTTCAGAAATATTGCAAAACTCTCCAAGTAGTATTCTTTCGGTGGACATGGAAATGAAGCATGGAGATCATGCAAATACTAGAGAATCCAACACAAGGTTCGGCATTGAAAGGCACAACAAAGATGGATACCCTTTGATGAATGGCAATGCAAACAATGGTGGTGGTTTTGGAGCCTTCACCATGGACGACATTGGAAGCAGATTCAATGTCACTACTGAGCAACTAGCTTCAAGGTTACATGGAAATGGTGTTTCACTCACACTAGGACTTCCACACGATGAGAACCTCTCTATCTCAGGAACTCAACATGGATTTCTCTCGCAGAATAATATTCCTTTGGGAAGGAGGCTTGAGATGGGAACGAATGGAAATGAGTTTTGTGCTATCAACACTACTCCACCACCTTCTTCTCACTCTGGTACCACTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGTTGCTCAGTTATTGCCAGATTTCGTGGCCTAA 2148 0.487 MLASINHHFSLNNHIPVSLREEERNMATYFHGSASEIQPSADGLQTLYLMNPSYVPYPDAPHHPTLLVNPNALGHASLPHAPPVSPSQQQQHHVIHGVTNILGSASSEDHTRPSLFGENIAAFHGFSAAPRVQYNLWGSVADQPATPSSSSGGGGFRRPSQQGLSLSLSSQQTAYRTVSGEIDVTGHGLVGGIGNSPASASASTGVILGSKYLKSAQELLEEVVNVGKGIYKEEKFAEKKANRESTNSGAGGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKCYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRFVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEIKDHEQTNGSENTRSKESNKEMGSNANVAPESSAIKLDHLQSKQESFNNQNTSPTEFSTNSSVGGSLQSHSGFHLAGCSDMQRSPNKPRSSEILQNSPSSILSVDMEMKHGDHANTRESNTRFGIERHNKDGYPLMNGNANNGGGFGAFTMDDIGSRFNVTTEQLASRLHGNGVSLTLGLPHDENLSISGTQHGFLSQNNIPLGRRLEMGTNGNEFCAINTTPPPSSHSGTTYESIDIQNRKRFVAQLLPDFVA 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00667 715 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 32 670 - -
Cca10g00667 715 SUPERFAMILY Homeodomain-like 393 459 IPR009057 -
Cca10g00667 715 MobiDBLite consensus disorder prediction 544 561 - -
Cca10g00667 715 MobiDBLite consensus disorder prediction 462 488 - -
Cca10g00667 715 Gene3D - 395 457 - -
Cca10g00667 715 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
Cca10g00667 715 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Cca10g00667 715 MobiDBLite consensus disorder prediction 505 536 - -
Cca10g00667 715 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 670 - -
Cca10g00667 715 MobiDBLite consensus disorder prediction 143 169 - -
Cca10g00667 715 SMART prehox3 201 344 IPR006563 -
Cca10g00667 715 Coils Coil 276 296 - -
Cca10g00667 715 MobiDBLite consensus disorder prediction 462 479 - -
Cca10g00667 715 Pfam Associated with HOX 206 343 IPR006563 -
Cca10g00667 715 MobiDBLite consensus disorder prediction 505 561 - -
Cca10g00667 715 MobiDBLite consensus disorder prediction 237 266 - -
Cca10g00667 715 SMART HOX_1 392 456 IPR001356 GO:0003677
Cca10g00667 715 CDD homeodomain 392 453 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00667 Cca-Chr10 7377046 7382009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00667 26 715 Homeobox Transcription Factor Family AT2G35940 45.822 2.11e-150 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca10g00667 POX 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00667 - - gmx:100779075 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00667 10 7377046 7382009 Cca10g00667 10 7377046 7382009 ECH
Cca10g00667 10 7377046 7382009 Cca04g00976 04 10504854 10505932 PCT