Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00664 ATGGGTTTTTTGTTGAAAGAAGCTTTGAAAACTCTCTGCGGTAGGAATCAGTGGTCTTATGCTGTGTTCTGGAAGATCGGTTGCCACAATTCCAAGCTATTAATCTGGGAAGAATGCTATTATGAACCTTTACCATGCCCTCCTCGTATGTTTGGAATGCCTGATTTGCCTTACCAAAATGGCGAAGGATGCTGGTTTTCTTTGGAGTCTCAGTCATCTCAGCTCGGGATTCAAGAGGAGGACCGAGTCTGTTCTTTGATTAACAAAATGTCTGTAAACAATTCAGTTATCATTGCAGGTGAAGGTACAATTGGACGGGCTGCATTTACGGGCAGCCATCAGTGGATTCTTTTGAACAATTTCACTAAAGATGCATATCCACCAGAGGTATACGCTGAAGTGCATCATCAGTTTTCAGCTGGAATACAGACAGTAGCAGTTATTCCTGTGCTGCCTCACGGGGTTGTTCAACTTGGTTCTTTCTTGCCTATAATTGAGAATATGGGATTTGTGAATGATGTTAAGAGCTTGATCTTGCAATTGGGATGTGTTCCTGGTGCCCTTCTATCCGAAGACTATTCAGCTAAAAACTCTGTCAAAAGACATGTTGAACCTGCTATTGCTGGTGTACCTGTATCTATTGATCTGCCTGTCATCACCTCAAATTGCACTCCCTCAGTAACTAATGGCTCCAACCAACAAAGTAGTTCATCTTATGCTTCAAGACCTTTTGTTCAAACACTTTGTCCTCTAAAGGCAGAGATAAATACTTCCCAAGGTTTTGCATTGACACCTGAAACTCGTATACTGAATCAGATATCCAATAACCCCTGCCTACCAAAGGTTATTCCAATTAGTAAAACAAGCTTTGCTGGCCAACGAGAGAATAGAGTTGTGGAAGCTGAAGTGATACCCTCAATTCTTGATTCATGCCTGCAGCAGCATTCTGCTTCATATAATGCAAGATCTGCATTGAATAACTTAACTTGTTCTGGTTCTTTTGGCCAATCTGGTCTAAGTGATGATAATCTAACATATATGGAACAACAAATCATATCAGCCATTGGGAATCGAGATAATGTTAATCCTTGTTTACGTGCATCAAGTACTTTAAACATGTCCCAACTAAAAACAGATGGAGGCCATATACATGGACACTATCTGGGTTCTGGCAGTACTTCATTACTTGGAGGGACTCCAACACATGGTGGGATGAGTACACTTTTGAGGTCAAATCTGATCACTAGTTCTGGTTCAAAATCTCCCCAAGCATCCACTACTGATTTATCTGGAGTAGAAGTTGGGATTGGACTTCAAAATTGTGATTCTTCAACTAAAGCAAGGAGTTGTTCGTTTGCAAATTTGACTAATCAATCAGGCACCTTTCCCATGCATGTAGAAGGTTCTGATCAGAAGATTCTCCCAGTAGATCTAAAGTGTGCTTCAACAAATCAAAAGATGGATTATGATTTGCTTCAGACCCCTAACCTGCCCTCTTTTCATGCTGAGGAGCATGTGCCCATTAGTGGTCAAATCCCTGGTCTTGCCAACGATTGCCTTCATAAAGATGGTAGTAGCCAATCTATGATGACAATGAATCCTAAGCTCAAACTATCTTGTGCTAAACCTCCATCAGGTGATGACCTGTTTGATGTTTTAGGGATGGATTTGAAACACAAATTGCTGAATGGAAACTGGACTAATCTCTTAGCTGATGAATCAGATGCTAATGCAGAAAATGTGGACAAAAAAGTAGCACCTATGAACATGCAGAGTGCAGCAACAGATCCGGATATTTATTCAGTTAAAGAGGCAATGTCGTACAGTGGCATCTTTTCTGGGATGGGAACAGACCACCTCTTGGATGCTGTGGTCTCCAAAGCCAAGTCTGTTGTAAAACAGGATTCTGATGAAATGTCTTGCAGGACAACATTGACAAGGAATAGTACCTCCTCGGTTCCCTCTCCTTCCTGTAAGCCAGTTATGTCTGGTCATGTGCAACGGGGATTGTTTGATTTTCCTAAGAATGGTGGTAAAACAGGTGCCACAGAAACTAGTTTTCTTAGGTCGGGATGTAACAAGGATGATGCTGGAAACTGTTCTCAAACTAGTTCTGTTTATGGCTCTCAACTTAGTTCATGGGTTCAGAATAGTGGGAGTGGTGTGAAACGTGAGAATAGTGTTTCAACTGGATACTCAAAGAGGCCAGATGAAGCTTGCAAACCAAATCGTAAAAGGCTTAAACCAGGAGAGAATCCCAGGCCTCGACCAAAAGATCGCCAAATGATTCAAGATCGCGTGAAAGAGTTGCGAGAAATTGTGCCAAATGGAGCAAAATGTAGTATAGATGCACTTTTGGAACGGACCATTAAGCATATGCTTTTCTTGCAAAGTGTGACAAAGCATGCTGACAAGCTGAAGCAAACAGGGGAGTCTAAGATTATTAATAAGGAAGATGGGCTGCTTTTGAAAGACAATTTTGAGGGAGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATTATAGTCGAGGATCTGAATTCTCCTCGTCAGATGCTTGTGGAGATGCTTTGTGAGGAGCGAGGCTTCTTTTTGGAAATTGCTGACTTAATCAGAGGATTAGGTTTAACCATCTTGAAGGGGGTAATGGAATCTCAAAATGACAAAATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACAAGGATGGAAATATTCATGTCACTCGTTCGTCTTTTGGAGCAAACAGTGAAGGGCAATGCATCTTCCTCCAATGCAATTGATAACATGATGGTGTCCAATGTTGATCATGCACTTAAAATTGCAGGTTTTGGAGAGGAATATTTCAGAACATCAGAGGTTGGAGATTCAAACAAATCATTTTTGCAAGGATATAAAAGTGTTCTTAACTCAAAACAAGTTGAAGAAAATTTGGCCAATTTTGCAAGGTGGGAACCCTGTGATGGTGGCTTCAGATATGGTCATCCATGGCAACAATACTTGAAGATTGGAAACCTGTCAAGACAGTGTGCCTATCGTATTGATGCTCTTAATGGTTTTCTTAACTCTACCAAGACACTAATAGAAATCAGAAGCAAAATACAAGAGTCATGCATGAAGATGAGCACAGAAACAGGAAAAGCTTTAAAGAAATTAGCAGTGGCAATACATAAAATGATTCCACCATCTTCTGCAGACACTCACATTGCCAAATCTAAGGTTGCTGCTACCAGCCTCAGATCCATTATTAAGACAGGATTGTGGGAAGAGACCAATCTCTTTGATGTTATTCCTGTTTTGACTGTGGCTTCTCTGTTGGTTGATGTGGTTTCTTACACTGAGAGATTAGCATATTTAATACAAGAATTAGCCACCCTAGCAAAATTTGAGAACAACATACTACCATAA 3429 0.41 MGFLLKEALKTLCGRNQWSYAVFWKIGCHNSKLLIWEECYYEPLPCPPRMFGMPDLPYQNGEGCWFSLESQSSQLGIQEEDRVCSLINKMSVNNSVIIAGEGTIGRAAFTGSHQWILLNNFTKDAYPPEVYAEVHHQFSAGIQTVAVIPVLPHGVVQLGSFLPIIENMGFVNDVKSLILQLGCVPGALLSEDYSAKNSVKRHVEPAIAGVPVSIDLPVITSNCTPSVTNGSNQQSSSSYASRPFVQTLCPLKAEINTSQGFALTPETRILNQISNNPCLPKVIPISKTSFAGQRENRVVEAEVIPSILDSCLQQHSASYNARSALNNLTCSGSFGQSGLSDDNLTYMEQQIISAIGNRDNVNPCLRASSTLNMSQLKTDGGHIHGHYLGSGSTSLLGGTPTHGGMSTLLRSNLITSSGSKSPQASTTDLSGVEVGIGLQNCDSSTKARSCSFANLTNQSGTFPMHVEGSDQKILPVDLKCASTNQKMDYDLLQTPNLPSFHAEEHVPISGQIPGLANDCLHKDGSSQSMMTMNPKLKLSCAKPPSGDDLFDVLGMDLKHKLLNGNWTNLLADESDANAENVDKKVAPMNMQSAATDPDIYSVKEAMSYSGIFSGMGTDHLLDAVVSKAKSVVKQDSDEMSCRTTLTRNSTSSVPSPSCKPVMSGHVQRGLFDFPKNGGKTGATETSFLRSGCNKDDAGNCSQTSSVYGSQLSSWVQNSGSGVKRENSVSTGYSKRPDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIINKEDGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNSPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMESQNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGNASSSNAIDNMMVSNVDHALKIAGFGEEYFRTSEVGDSNKSFLQGYKSVLNSKQVEENLANFARWEPCDGGFRYGHPWQQYLKIGNLSRQCAYRIDALNGFLNSTKTLIEIRSKIQESCMKMSTETGKALKKLAVAIHKMIPPSSADTHIAKSKVAATSLRSIIKTGLWEETNLFDVIPVLTVASLLVDVVSYTERLAYLIQELATLAKFENNILP 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00664 1142 MobiDBLite consensus disorder prediction 716 762 - -
Cca10g00664 1142 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 177 IPR025610 -
Cca10g00664 1142 Pfam Aluminium activated malate transporter 945 1131 IPR020966 GO:0015743
Cca10g00664 1142 MobiDBLite consensus disorder prediction 737 762 - -
Cca10g00664 1142 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 942 - -
Cca10g00664 1142 MobiDBLite consensus disorder prediction 716 733 - -
Cca10g00664 1142 CDD bHLH_AtLHW_like 751 820 - -
Cca10g00664 1142 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 747 796 IPR011598 GO:0046983
Cca10g00664 1142 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 942 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00664 Cca-Chr10 7276789 7288081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00664 534 937 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.657 1.51e-116 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00664 - - gmx:100787748 1558.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00664 10 7276789 7288081 Cca10g00664 10 7276789 7288081 ECH
Cca10g00664 10 7276789 7288081 Cca04g00974 04 10414768 10421884 PCT