Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00659 ATGGAAGGTGTTCAGATAGAAGTCTTTATCTTGTTTTGTTTTGGTCTAATAATTACAATGAGTTATGGTGCTACCAACACAAATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTTTGAAATGGCCAGAGGAGGGAGATGATCCTTGTGGTCCTCCTTTATGGCCTCATGTTTACTGTTCTGGAGATAGAGTCAACCAGATTCAGGCTAAGAATTTGGGGCTTAGAGGGTCATTGCCTCAAAACTTTAACCAACTGTCAGAACTCTACAATTTGGGTCTCCAACGCAACAACCTTAGTGGGATGTTGCCAACTTTTAGTGGATTATCCAAATTGGAATTTGCTTTCTTGGATTATAATGCATTTGATGCAATACCAGCTGATTTCTTTAATGGACTTAGCAGCATTAGGGTCTTGTCTTTGGAAGAAAATCCACTGAATACAAGTAGTGGGTGGTCGTTTCCCATGGCTTTAGAAAAATCAGAGCAGTTAACCAATCTTTCTCTGGTGCATTGTAACTTGGTTGGACCATTGCCTGATTTTCTTGGCACATTGCCATCCCTCACAAATCTAAGGCTTTCAGGAAACAAGCTGTCTGGTGCCATTCCAGCTACTTTTGCTCAGTCTTCAATTCAGGTGTTGTGGTTGAATAATCAAGAAGGTGGTGGGTTGAGTGGTCCTATTGATGTTATTGCTTCAATGACTTTTCTAAGACAGGTTTGGCTACATGGAAACCAGTTCACTGGAACAATTCCACAGAATATCGGAAATCTTACTTCCCTGCAGGAACTAAATCTCAATAGTAATCAACTTGTTGGCTTGATTCCTGAGTCCCTAGAACATATGGACCTTGAGATCCTAGTGTTAAATAATAACATGCTAATGGGTCCAATACCAAAATTTAAGGCTGCCAATGTTTCTTATGCTAACAATTTCTTTTGTCAACCTGAACCAGGGCTTGAATGTGCCCCTCAAGTTACTGCACTGCTGGATTTTCTGGATAAGCTGAATTACCCTTCATCTCTCGTTTCTGATTGGGTTGGTGATGAACCATGCACACGCAGCACAGGTAATTGGTTTGGATTGAGCTGCAATTCAAACTCAGAGGTGTCTATTATCAATCTACCTGAACACAAGCTAAATGGTACTCTAAGTCCCTCACTTGCTAAGATAGATTCACTCCTAGAAATTAGGCTTGAAGGAAACAACATAACCGGCTCAGTTCCCACCAATTTTACCAAATTAACATCTTTGAGATTGTTGGATTTAAGTGATAACAACCTTGTGCCTCCAATGCCAAAATTTCATAATGATGTGAAGGTTATTATTGGGGGAAACCCTCTTCTTCCTAATCAAACTAATGGAAGTCCCAGTCCGATGCCTATTAGAAGCCCACCTTCACCACAAAATCCATCCTCTCATGAGCCATCTGTTCCAGATCAGAGTTCAAGATCAAATCAATCCAAACCAAGTGACTTGAAAAGATTTAAAACAGTAGCAATAGTGACTGGAGTTGCAGGGTTTGCAGTTATAGCTCTTTTGGTTGTTTATCTCTTCCTATGTTGCAGGAAGAACAAAAAGTCCTCCTTGGATGCACCAAGTTCCATTGTGGTTCACCCACGTGATCCATCTGATCCAGATAACATGGTTAAAATTGCAGTTTCAAATACCACTGGAAGTTTGTCAACAAAGACTGGGACAAGTTCTCTTAGTAACATTAGTGATGAAACTCAAAACTCTCACATGATTGAGGATGGCAACCTTGTCATCTCTATACAAGTACTACGCAAGGTTACCAATGATTTTGCCTCAGAAAATGAGCttggtcgtggagggtttggaactgtttacaagggggaactagaagatgggacaaaaattgcagtgaagagaatggagcatggggctattagcaataaggcattggaagagtttcaagctgaaatagctgttctttccaaggtccggcatcgacatctggtatccttgttggggtattccattgaaggcaatgaaagacttttggtttatgaatatatgtctcttggtgctctaagccagcatctttttcattggaaaagcttgaatttggagcctttgtcttggtcacagagacttgcaatagcactagatgttgctagagggatggagtacctccacagtcttgcacgccagacctttattcatcgagatctcaagtcttctaatattttattgggtgatgattttcgagctaaagtttcagattttggattGGTGAAGCATGCCCCGGATAGTGAGAAGTCTGTAGTGACCAAACTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTATGGTGTGGTGCTGATGGAACTTCTGACCGGACTTGTGGCACTTGATGAGAGCCGGCCAGAGGAAAGCCGGTACTTGGCTGAATGGTTTTGGCGAATTAAATCAAGCAAGGAGAAGCTTATGTCTGCCATTGATCCGGTTCTGGAAGCAACTGAAGAGACTTTTGAGAGCATAACCATTGTGTCTGAACTTGCTGGACACTGCACTGCAAGGGAAGCACATCATAGGCCAGATATGAGTCATGCAGTGAATGTCCTGTCAGCATTAGTGGAAAAGTGGCAGCCAGTTGATGATGAATTAGATTACTACTCTGGCATTGACTACACAAGACCACTTCCTCAAATGTTGAAGATTTGGAAGGAAGCAGAAAGCAAAGAGTTTAGCTATGCTTCTACTTCTAGTCTTGAAAACAGCAGAGGCAGTATTGCAGCTAGGCCTCTTGGGTTTGCAGACTCTTTTACTTCTGCTGATGCAAGATGA 2874 0.3539 MEGVQIEVFILFCFGLIITMSYGATNTNDVKVLNDFRKGLENPELLKWPEEGDDPCGPPLWPHVYCSGDRVNQIQAKNLGLRGSLPQNFNQLSELYNLGLQRNNLSGMLPTFSGLSKLEFAFLDYNAFDAIPADFFNGLSSIRVLSLEENPLNTSSGWSFPMALEKSEQLTNLSLVHCNLVGPLPDFLGTLPSLTNLRLSGNKLSGAIPATFAQSSIQVLWLNNQEGGGLSGPIDVIASMTFLRQVWLHGNQFTGTIPQNIGNLTSLQELNLNSNQLVGLIPESLEHMDLEILVLNNNMLMGPIPKFKAANVSYANNFFCQPEPGLECAPQVTALLDFLDKLNYPSSLVSDWVGDEPCTRSTGNWFGLSCNSNSEVSIINLPEHKLNGTLSPSLAKIDSLLEIRLEGNNITGSVPTNFTKLTSLRLLDLSDNNLVPPMPKFHNDVKVIIGGNPLLPNQTNGSPSPMPIRSPPSPQNPSSHEPSVPDQSSRSNQSKPSDLKRFKTVAIVTGVAGFAVIALLVVYLFLCCRKNKKSSLDAPSSIVVHPRDPSDPDNMVKIAVSNTTGSLSTKTGTSSLSNISDETQNSHMIEDGNLVISIQVLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGAISNKALEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMSLGALSQHLFHWKSLNLEPLSWSQRLAIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKHAPDSEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMSAIDPVLEATEETFESITIVSELAGHCTAREAHHRPDMSHAVNVLSALVEKWQPVDDELDYYSGIDYTRPLPQMLKIWKEAESKEFSYASTSSLENSRGSIAARPLGFADSFTSADAR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00659 957 PANTHER OSJNBA0070M12.3 PROTEIN 6 957 - -
Cca10g00659 957 SUPERFAMILY L domain-like 330 440 - -
Cca10g00659 957 MobiDBLite consensus disorder prediction 452 498 - -
Cca10g00659 957 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Cca10g00659 957 Pfam Leucine rich repeat N-terminal domain 330 371 IPR013210 -
Cca10g00659 957 Pfam Protein tyrosine and serine/threonine kinase 611 882 IPR001245 GO:0004672|GO:0006468
Cca10g00659 957 MobiDBLite consensus disorder prediction 465 479 - -
Cca10g00659 957 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Cca10g00659 957 MobiDBLite consensus disorder prediction 480 498 - -
Cca10g00659 957 Gene3D Ribonuclease Inhibitor 330 458 IPR032675 -
Cca10g00659 957 PANTHER OSJNBA0070M12.3 PROTEIN 6 957 - -
Cca10g00659 957 SMART serkin_6 608 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00659 957 Gene3D Transferase(Phosphotransferase) domain 1 686 901 - -
Cca10g00659 957 Gene3D Phosphorylase Kinase; domain 1 569 685 - -
Cca10g00659 957 Gene3D Ribonuclease Inhibitor 26 324 IPR032675 -
Cca10g00659 957 CDD STKc_IRAK 614 884 - -
Cca10g00659 957 ProSiteProfiles Protein kinase domain profile. 608 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00659 957 SUPERFAMILY L domain-like 25 307 - -
Cca10g00659 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Cca10g00659 957 SMART LRR_typ_2 139 162 IPR003591 -
Cca10g00659 957 SMART LRR_typ_2 92 114 IPR003591 -
Cca10g00659 957 SMART LRR_typ_2 115 138 IPR003591 -
Cca10g00659 957 SMART LRR_typ_2 191 214 IPR003591 -
Cca10g00659 957 SMART LRR_typ_2 264 287 IPR003591 -
Cca10g00659 957 SMART LRR_typ_2 421 443 IPR003591 -
Cca10g00659 957 SUPERFAMILY Protein kinase-like (PK-like) 582 892 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00659 Cca-Chr10 7215076 7219039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00659 83 902 Receptor kinase-like Gene Family AT1G55610 30.665 1.56e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca10g00659 PK_Tyr_Ser-Thr 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00659 - - gmx:100785090 1660.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00659 10 7215076 7219039 Cca10g00659 10 7215076 7219039 ECH