Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00655 ATGGAGTCTCGGATGGATCAGTACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCTGCGATTCTCGTGAACCACAAAGCGGAGAAGATGAAATACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATCCAGCATCCTTACATTGTGGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAACTACTCTTGGCAGTGGAATACCTGCATTCAAATTATGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCTAACTATATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATACGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCCTTTGATATGGCAGGCTTGATAAGCAAGATAAACCGTTCCTCAATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAGCAGCATCTGAAATCTTAAAGCACCCTTATTTGCAGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACTCCATCAGCCACTTCTCCTGAAAAGCCGATTTCTGCTGTCCATGATCCTCGAAAAAATATGCCAGAAAGTCAAAACAGTAGTAGTTTGAGTACTGACAAAGATAGTTTGGTGTCAAATGAGAAAAACACTGCAAAAACAGTGCAAAAGTGTGATAACAAAATCACTGAAATAGACTTGACATCAGTTGAGGATGATGGCTCCGAGCATCTCCTGCCTGGTGAAGAGGGAAATGGATCCAGAAAAGTCAATGGGAAATCAGATGAGCAAGAGGTGATGAAGCAACTTAATAACGAACACCATTCTAATGTTGTTTCTAAGCAACCAAAAACAACTAAGAATCAAGTGACAACATTAAAAAATGGAAAACTTAGAGAGACAAGTTCTCCAATTAGAGGCAATCGCATAAAGGGTGGTGGTGTATCGATCCATAAAATAAATACAGAGACAGTGTCCAAATTGCCCAAACCTAATTTCGGTGCTTATGATTTGAAGCCTAATTTGGAGGTGCCAACTATTGCACCTTCAAAAGCAACACCTGATTCTGCAAAAAGAATGCAAGGAGCACATACTTCAAAGCATCAGTTACCAATGATAGAATCCATACCAAAAGCTAAACCTCGACATAATGTGATTCCATCATCTGGTCCTATCAAACAAGTAGAAGTACGAGAAGTTCCTGCCAAGCCAAGGCAAAAGACTCCACCGAGTTTACTTAAACCACCTTCTTTTCCAGGACATGTGAAGCAGGCTGGGTTTGATGTTCCAAATATTACTGGAAAGTCAATTCTAAATAAAATGGTTAGAGAGCCTGAGACGAGCCATCATCAGTTGACCAACAGTAATCTACCACATGTTTCTAGAGAGCCTTTGACCACTTTTGAAAGCAGTTCCAAAGGATTGCAGACAGACAGCAGCAATTCTGTCTCGTCCTCGGTCTCTATTCAAGGATTTGAACTTTCTGATTTTGCAACAACTTTTATTGATTTGAGTGAACCAACACATCCTGATCATGAGAGTTTAAACCACACTGAAAATGTGGAATCACATGCAGATAGCAGTTCACCTGCGGCCTCTTTGCATTTTGAGATGTCTGAACAATTGTCTAGGGAAACCTCTATGGTTACACCCCAATTTCAGAATATAGTGAATAGTAATGAGAAAGTAAGTCCCAGTTTTCACTCAGTTCAAGATGCTAAGGTAATATTTGTTTCTGATGATAGTTTTCCCATAAATCAGACAACTACATCTGCTGCCTCCAAGTGTGATAATATATCCGTAGATCCCTCTGCTGAATCCACACAAGAAATTGAAGACCCGCAAGATATTTCTAAGGAAGTGGCTTCAACCAAGTCTCTCCAACATTCAGTCTCCATTTCTGGAGAAAAGTGTGTTTGTGAAGAATTCAGTCCAGCAAGCAAGCCAAATAATAGGGTTGATAAAGTTAGCCAGCCAAAACTTACGTGCATTTCCACTGGTGATGACAAATTCATGATGAGGGAAAGACTTTCATCAGTGGATGAAACTGCTCCTTTGGTTATCTCTACTAAATTTTCAAGCCAGAAAGTTTTGCAAGAAGAGAAAGGAACAGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTGTTGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTACCGTGTGGGGAGTGAGCAGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATAAACATTGCAAGGGATGATTTAGAAATGAGAAACATGAGCACTCCTTTGACCCTAAAATCCTCAAATTGCTCTGAAGCTATTGGCTTGAAGTCAAATATTTCTGATAATGTGGAAATCAGAAACTTGACTAATCCTCCTAACTTAAAATCTTCGAGTTGCACTGACTCTTTGAGCATGAAATCAAGTTTTTCTGATCATTCTGGTGTTACGGAACAAGATGTGAAAATCCCGGATTCAATTATTTCAAAATCTGATTCTTCCGAGTATACCAAATATAACACTCCAAAAGCTGAAGAGGAAACACCAGCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCAGAGGCACTTGAAGGGCTGTTAGAACTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAAGAACTTGCAGTTGTTCTGAAGCCCTTTGGAAAAGATAAAGTCTCCCCGAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGGTTGAGGAAAGTGGGGGACGCTGTTAA 3108 0.4125 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKMKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPAASEILKHPYLQPYVDQYRSSFCTPSATSPEKPISAVHDPRKNMPESQNSSSLSTDKDSLVSNEKNTAKTVQKCDNKITEIDLTSVEDDGSEHLLPGEEGNGSRKVNGKSDEQEVMKQLNNEHHSNVVSKQPKTTKNQVTTLKNGKLRETSSPIRGNRIKGGGVSIHKINTETVSKLPKPNFGAYDLKPNLEVPTIAPSKATPDSAKRMQGAHTSKHQLPMIESIPKAKPRHNVIPSSGPIKQVEVREVPAKPRQKTPPSLLKPPSFPGHVKQAGFDVPNITGKSILNKMVREPETSHHQLTNSNLPHVSREPLTTFESSSKGLQTDSSNSVSSSVSIQGFELSDFATTFIDLSEPTHPDHESLNHTENVESHADSSSPAASLHFEMSEQLSRETSMVTPQFQNIVNSNEKVSPSFHSVQDAKVIFVSDDSFPINQTTTSAASKCDNISVDPSAESTQEIEDPQDISKEVASTKSLQHSVSISGEKCVCEEFSPASKPNNRVDKVSQPKLTCISTGDDKFMMRERLSSVDETAPLVISTKFSSQKVLQEEKGTVLQNPAPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINIARDDLEMRNMSTPLTLKSSNCSEAIGLKSNISDNVEIRNLTNPPNLKSSSCTDSLSMKSSFSDHSGVTEQDVKIPDSIISKSDSSEYTKYNTPKAEEETPAKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMVEESGGRC 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00655 1035 MobiDBLite consensus disorder prediction 293 321 - -
Cca10g00655 1035 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 936 1019 - -
Cca10g00655 1035 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 867 - -
Cca10g00655 1035 MobiDBLite consensus disorder prediction 606 620 - -
Cca10g00655 1035 MobiDBLite consensus disorder prediction 621 641 - -
Cca10g00655 1035 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00655 1035 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00655 1035 CDD STKc_Nek 7 262 - -
Cca10g00655 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cca10g00655 1035 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Cca10g00655 1035 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 867 - -
Cca10g00655 1035 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 936 1019 - -
Cca10g00655 1035 Gene3D Transferase(Phosphotransferase) domain 1 90 337 - -
Cca10g00655 1035 SUPERFAMILY Protein kinase-like (PK-like) 4 309 IPR011009 -
Cca10g00655 1035 MobiDBLite consensus disorder prediction 335 361 - -
Cca10g00655 1035 MobiDBLite consensus disorder prediction 604 641 - -
Cca10g00655 1035 MobiDBLite consensus disorder prediction 497 520 - -
Cca10g00655 1035 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Cca10g00655 1035 MobiDBLite consensus disorder prediction 273 321 - -
Cca10g00655 1035 MobiDBLite consensus disorder prediction 545 583 - -
Cca10g00655 1035 MobiDBLite consensus disorder prediction 548 583 - -
Cca10g00655 1035 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00655 Cca-Chr10 7176241 7184437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00655 14 263 MAP Kinase Kinase Kinase AT1G53570 32.549 6.47e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca10g00655 Pkinase 3.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00655 K08857 - gmx:100818943 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00655 10 7176241 7184437 Cca10g00655 10 7176241 7184437 ECH
Cca10g00655 10 7176241 7184437 Cca04g00968 04 10284457 10290444 PCT