Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00652 ATGTCTTCCAACAAGAGAAGGTTCATGAAAGCCCTATTCAAATCAAAAGGAAGCTGCGGGTGTAGCAAACCGAAATCATCTGAAGTACAAGAACCCACCCTAAAACCAAGAATCTCCATTTACCAAAACACAAACCCTAGCAGCAGCCTCAATTCATCCACCACTTCCGGCGACCGCAACGGCGACGACGAAGACGAAGTCTTCACCTCCACCACCATCTCCGAACCCGACACAAACCTAAACCACTACAAGAGCAATATCATGAGCGCGAAACTGGTGGACAGCATCGCCGTGGAGAAGGAATCGAAGGACCCACATAAGGATTTTCGTGATTCCATGCTCCAAATGATCTTGGAGAGAGAGATCTACACCGAAACCGATCTTCAGGAGCTTCTCGAGTGCTTCCTTCAGCTCAACGCCACGTGTCACCACCAAGTCATCGTCGACGCCTTCGTGGAGATCTGCGAAGAAGCGTTTCCGAGGAAGAATACGAGTCCTGAAGCGCGTCGCAGGAACCAGATCATGCGAAAGAGTCGGTGA 540 0.5019 MSSNKRRFMKALFKSKGSCGCSKPKSSEVQEPTLKPRISIYQNTNPSSSLNSSTTSGDRNGDDEDEVFTSTTISEPDTNLNHYKSNIMSAKLVDSIAVEKESKDPHKDFRDSMLQMILEREIYTETDLQELLECFLQLNATCHHQVIVDAFVEICEEAFPRKNTSPEARRRNQIMRKSR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00652 179 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 1 164 - -
Cca10g00652 179 MobiDBLite consensus disorder prediction 20 57 - -
Cca10g00652 179 MobiDBLite consensus disorder prediction 16 75 - -
Cca10g00652 179 Pfam Transcriptional repressor, ovate 102 157 IPR006458 -
Cca10g00652 179 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 96 155 IPR006458 -
Cca10g00652 179 ProSiteProfiles OVATE domain profile. 98 157 IPR006458 -
Cca10g00652 179 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 164 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00652 Cca-Chr10 7144739 7146002 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca10g00652 Ovate 7.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00652 - - gmx:102670259 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00652 10 7144739 7146002 Cca10g00652 10 7144739 7146002 ECH
Cca10g00652 10 7144739 7146002 Cca04g00957 04 10197778 10198686 PCT