Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00647 ATGGAAGGGGTTTCCAGGGAAGCCCAGATGTCAATCGCCGCTTCCTCCATGTTTCCTGGCTTCAGATTCTGTCCCACCGATGAAGAGTTGATTTCTTATTACCTTAGGAAGAAGTTGGACGGCCATGAAGACAGTGTTCAAGTCATTCCCGAGGTTGAGCTTTGTAAATACGAACCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAGATAACGAATGGTTCTTTTTCTCTCCACGTGGAAGAAAGTACCCAAATGGTTCTCAAAGTAAAAGAGCAACAGAGTGTGGATATTGGAAGGCCACTGGCAAAGAACGCAATGTAAAGTCAGGTTCTAACGTTATAGGAACAAAGCGCACTTTGGTGTTCCACTTAGGGCGTGCACCTAAAGGAGAAAGAACTGAATGGATTATGCATGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTCATATGTCGCCTCAAGAGGAACACTGATTTCCGTTTGAACGATGCTTCAAATAGAGCTTCTTCAAGTCAAAGGCACCCCGTGAATTCACATGAGAGTGGTTGTGCTGTCTCAGAAGGTGGCACTGATCAAAGGGGTGTCTGTGAGCAAGATAAAGAGGTCGGGTGTAGCTCCAAACGTAGCAGTAGCAGTTATGGTTCAATGGACCAAATTGATTCTGTTTCCGAATCAAATCCGCGACCAGCTAATGAAGCTACTTTGACAGAATCTTCAAATCAACCAAAGGAGGCGTATGAAGAGGATTGTTATGCTGAGATACTAAAGGACGATATCATCAAACTAGATGAATCATCAATCTCAGAAGAGGGTCACACAAGAGCACAGGATCCAGCACAAGTGCATCCCGCACAAGGCACAGCACAACGAAGAATAAGATTAAGGATAGGGAATTCAAAGCATTCTCCTGCAGTAGTTCGTTTCCCAAGCACAATCCACTCATCAAAGAGTGCCTTAGCCAACCGTTTGGCGATGTTTGCTTTCTTCATTTTCACTTTGATAGTTCTATATTTTTGGTCTTTATTGTGTGGACTCAAGTGA 1050 0.4371 MEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEDSVQVIPEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNTDFRLNDASNRASSSQRHPVNSHESGCAVSEGGTDQRGVCEQDKEVGCSSKRSSSSYGSMDQIDSVSESNPRPANEATLTESSNQPKEAYEEDCYAEILKDDIIKLDESSISEEGHTRAQDPAQVHPAQGTAQRRIRLRIGNSKHSPAVVRFPSTIHSSKSALANRLAMFAFFIFTLIVLYFWSLLCGLK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00647 349 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Cca10g00647 349 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Cca10g00647 349 Gene3D NAC domain 26 163 IPR036093 GO:0003677|GO:0006355
Cca10g00647 349 MobiDBLite consensus disorder prediction 208 244 - -
Cca10g00647 349 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 11 345 - -
Cca10g00647 349 MobiDBLite consensus disorder prediction 167 247 - -
Cca10g00647 349 MobiDBLite consensus disorder prediction 167 188 - -
Cca10g00647 349 MobiDBLite consensus disorder prediction 271 290 - -
Cca10g00647 349 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 345 - -
Cca10g00647 349 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00647 Cca-Chr10 7077139 7080938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00647 4 347 NAC Transcription Factor Family AT2G27300 45.777 1.28e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g00647 NAM 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00647 - - gsj:114373381 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00647 10 7077139 7080938 Cca10g00647 10 7077139 7080938 ECH