Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00639 ATGTCACACAACATGGAGGATCTCCCACCTGGTTTTCGCTTCTACCCAACAGAAGAAGAGTTACTTGCCTTCTATCTTCACAACCAGCTCCAAGGACAAAGACATGACATGAGTAGAGTTATTCCGGTCGTTGACATCCACGGCGTAGAGCCATGGACCCTCCCAAGCCTTGCAGGGGAGCTTTGTCGTGGAGACACTGAGCAATGGTTTTTCTTTTCCCCAAGACAAGAGAGAGAGGCCAGAGGAGGCAGACCCAACAGAACCACCGCCAGTGGCTATTGGAAGGCCACGGGCACTCCTGCCCATGTTTACTCTTCTCATAACAAAGTCATTGGCATGAAGAAAACCATGGTGTTTTACAAAGGGAAAGCTCCCACGGGGAGAAAAACCAAATGGAAGATGCATGAGTATAAAGCCATTGAACACCCCCCTGACCAATCCAACACTACCCCTCCAAAGTTGAGGCACGAATTCAGCTTGTGTAGAGTTTATGTGATATCGGGAAGCTTTCGGTCGTTTGATCGACGGCCACTAGAGGgatattcaagagctgttgatggggacagaggtggtgcttcaacaagtGCTCAACAGAGAGCACCCGTGGTGGATGGATCAAGCTCTTCTGAAACTTCCCATTCTGGAGGAGGAGGTGCTGCTCTTACCTCAGAGGCTGTGGCAGGGTCAAGTGGAACAAATTGGAATCAAAGTAATAATAGCGTTGAAGAACCATTTTGGGAATGGGAACAGCTAAATTGGCCATGA 765 0.4601 MSHNMEDLPPGFRFYPTEEELLAFYLHNQLQGQRHDMSRVIPVVDIHGVEPWTLPSLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGTPAHVYSSHNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAIEHPPDQSNTTPPKLRHEFSLCRVYVISGSFRSFDRRPLEGYSRAVDGDRGGASTSAQQRAPVVDGSSSSETSHSGGGGAALTSEAVAGSSGTNWNQSNNSVEEPFWEWEQLNWP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00639 254 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 8 254 - -
Cca10g00639 254 SUPERFAMILY NAC domain 3 164 IPR036093 GO:0003677|GO:0006355
Cca10g00639 254 MobiDBLite consensus disorder prediction 191 218 - -
Cca10g00639 254 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Cca10g00639 254 Gene3D NAC domain 17 169 IPR036093 GO:0003677|GO:0006355
Cca10g00639 254 MobiDBLite consensus disorder prediction 183 254 - -
Cca10g00639 254 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Cca10g00639 254 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 254 - -
Cca10g00639 254 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00639 Cca-Chr10 6970786 6972472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00639 6 253 NAC Transcription Factor Family AT3G44350 57.258 2.62e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g00639 NAM 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00639 - - gmx:100784960 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00639 10 6970786 6972472 Cca10g00639 10 6970786 6972472 ECH
Cca10g00639 10 6970786 6972472 Cca04g00937 04 9975376 9976586 PCT