Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00628 ATGCCTATGATAAGGAGTTCAACAAAACTCACTTCCCATTGTTCCCAAAGTAGTGATCCTTCGTCATCATTGTTTTTCCTTGAATCAAAAGAGAAGCTCAAGAATAAGACTCAAGAATGCAAGTCTCTGAACACTAAAGAGAATGATGATAAGGGCAAGGATAAAGAAGAAGGGCATGAGGCACGTGTAGAGGAAACGGGGCGTGAGAGGCTGAAGAGGCTTCGGGAAGAGGTGATGATGGAGAAGGTTAAGATACCAGAAAAGTGGGGTCAAGAACAAATGTTGAAGGATTGGATGGACATTACTATGTTTGATGCATTCTTTGCTCCTCCTCATAGCATGATTGTCACGGCTCGTGATGCTCTTATTGCTAATGCACGCACTGGCTATGGGAGGAATGATCGATATATGTTCTCAATATTCCCAGGCCTGGATCTGATTCTGATCTTCTTTCTTCCTCTGGCCCAGCCCATTCCACGGGTCCACGCTATATACTTGTTCCTCCCGCCGCGCGAAACCCTAGCTAGGGTTTGGCCTGCGCTTTTAGATCTATATCCACCTAGCCCTTCATTTGGAAAACCCCAAGTTTCAAACATGAGTAAGCTTCAGAGTGATGCTCTTAGGGAGGCAATCTCAGGAATCATGGCTGATTCCAAGGAGAAGAACCGTAAATTTGTGGAGACCATTGAGCTCCAAATTGGACTGAAAAACTATGATCCCCAAAAGGACAAGCGTTTTAGTGGCTCTGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGATATGCATGCTTGGTGATGCCCAACACGTTGAGGAGGCCGAGAAGATAGGATTGGATTACATGGATGTAGAGGCATTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAGAAGCTAGCCAAAAAATATCACGCTTTTTTGGCTTCTGAAGCAGTCATCAAGCAAATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGCACGTTTTATTGGAAGTTCCCAACACTTGTGACTCACCAAGAAACTCTCGAGTCAAAGGTTAATGAGAGTAAGGCTATGATCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGGAATGTTAGCATGGAGGAAAAACAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCATTGTTGAAAAAGAACTGGCAGAATGTAAGTCCTCTGTTGTCCAAAAATTCCGACAAAACAAAACAACAGGAGTCGGTAGTAATTGAACCGTAA 1272 0.4403 MPMIRSSTKLTSHCSQSSDPSSSLFFLESKEKLKNKTQECKSLNTKENDDKGKDKEEGHEARVEETGRERLKRLREEVMMEKVKIPEKWGQEQMLKDWMDITMFDAFFAPPHSMIVTARDALIANARTGYGRNDRYMFSIFPGLDLILIFFLPLAQPIPRVHAIYLFLPPRETLARVWPALLDLYPPSPSFGKPQVSNMSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGTFYWKFPTLVTHQETLESKVNESKAMIKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSPLLSKNSDKTKQQESVVIEP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00628 423 Gene3D - 219 407 - -
Cca10g00628 423 MobiDBLite consensus disorder prediction 35 66 - -
Cca10g00628 423 MobiDBLite consensus disorder prediction 1 22 - -
Cca10g00628 423 CDD Ribosomal_L1 207 402 IPR028364 -
Cca10g00628 423 Gene3D - 263 356 IPR016095 -
Cca10g00628 423 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 200 411 - -
Cca10g00628 423 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 200 411 - -
Cca10g00628 423 SUPERFAMILY Ribosomal protein L1 201 404 IPR023674 -
Cca10g00628 423 Pfam Ribosomal protein L1p/L10e family 220 403 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00628 Cca-Chr10 6874529 6887278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00628 199 410 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 84.434 1.44e-111 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00628 K02865 - gmx:100808580 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00628 10 6874529 6887278 Cca10g00628 10 6874529 6887278 ECH